RNA id: AMCG00001402


Basic Information

Item Value
RNA id AMCG00001402
length 1497
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00001402
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 2221167 ~ 2251759 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGACGAATCCACTGAGCTTTGGTACCTTGTTCATCTCCTCAGGGGACATGTGGCACATTTAGAGGATGATGATGGGGATGATGATGAAACTCAACACTCTTCCAGCTCCACCATGAGGCCAAAAGTCCCGCCGCCACTGCCCCCCAAGCCCAAGTCCATCTGCATCCCCCAGGAGAGTCCCTCAGGAGATGATGACAACAACCAGGGAACCATCAAGAGATGCCCCACATCAGAGAGTCCAGCCAGACCGGCCTCCTATGTCCCCCCCCGTCCCCCGCCTCCCCGGCTTCCACTGCACAAGCGCAGCAGCCTAGGTAATGGTTTGAATGCATCCCAAGTGAATGGAGACAAGGAGCACGCCTTCCATCAGGTAGGAGAGAAGCAGTCCACCATGCCCCCTGCTGTCCCAATACGGAGAGACAAGAAGGACATACCGATGGGTGCATGTTTCTCAAAAGTCTTCAATGGCTGTcccttaaaaatacattgtgccACATCCTGGATAAATCCTGACACTAGAGACCAGTATTTGATATTTGGTGCAGAGGAAGGAATTTACACTTTAAATCTGAATGAATTGCACGAGACTTCAATGGAGCAGCTTTTTCCACGGCGGTGTACGTGGCTCTATGTAATGAACAATAGTTTGCTTTCAATATCCGggaaAGCATCCCAGCTGTATTCCCATAACCTGGCAGGCCTGTTTGAATATGCTCGCCAAATGCAGAAGTTGCCTGTTGCCATCCCTACTCACAAGTTACCAGACAGAATCCTTCCCAGGAAGTTTGCAGTATCCACAAAAATTCCAGACACAAAAGGCTGCCAGAAGTGTTGCGTAGTGAGAAATCCCTATACAGGACACAAGTACCTCTGTGGTGCCTTCCAGTCCAGTGTTATCCTTTTCGAGTGGGTAGAACCCATGCAGAAGTTCATGCTCATCAAGAACATTGACTTCCCCTTGCCATGCCCATTGGAGGTGTTTGAGATGTTGGTGGTGCCCGAGCAGCAGTATCCTCTGATCTGTGTGGCCGTCAGTAAGGGCACCGAACTCAACCAAGTGGTGCGCTTCGAGACTGTCAATCCGAACTCCACCTCCTCCTGGTTCACAGAGTCAGATGCACCGCAGACTTGTGTGATCCATGTCACACAGTTGGAGAGAGACACCATTTTAGTCTGCCTTGACCgttgTATAAAGATAGTGAATCTTCTAGGAAGGTTAAAGTCCAGCAGGAAGTTGTCAGCAGAACTAACATTCAATTTCCAGATTGAGTCTATAGTTTGCCTCCAGGACAGTGTTTTGGCATTCTGGAAGCACGGCATGCAAGGAAGAAGCTTCAAATCCAATGAAATCACACAGGAGATTTCTGACAATACAAGGATCTTCAGGCTATTAGGATCTGACAGAGTGGTTGTGTTGGAGAGCAGGCCGACTGACAACCCTACAGCGCACAGCAACTTGTATATATTGGCAGGACATGAAAACAGTTACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198225 lncRNA downstream 201303 2004131 ~ 2019864 (-) False AMCG00001396
TU198185 lncRNA downstream 313404 1907559 ~ 1907763 (-) True G157362
TU198180 lncRNA downstream 367878 1853013 ~ 1853289 (-) True G157358
TU198173 lncRNA downstream 395543 1824197 ~ 1825624 (-) True G157353
TU198144 lncRNA downstream 472305 1748546 ~ 1748862 (-) True G157329
TU198314 lncRNA upstream 167769 2419528 ~ 2419741 (-) True G157463
TU198328 lncRNA upstream 258357 2510116 ~ 2512566 (-) False G157476
TU198327 lncRNA upstream 259542 2511301 ~ 2512566 (-) True G157476
TU198330 lncRNA upstream 265863 2517622 ~ 2517976 (-) True G157478
TU198334 lncRNA upstream 292989 2544748 ~ 2545008 (-) True G157482
AMCG00001409 mRNA downstream 53823 2110416 ~ 2167344 (-) True AMCG00001409
AMCG00001408 mRNA downstream 175729 2021959 ~ 2045438 (-) True AMCG00001408
AMCG00001396 mRNA downstream 201362 2002361 ~ 2019805 (-) True AMCG00001396
AMCG00001398 mRNA downstream 353067 1867328 ~ 1868100 (-) True AMCG00001398
AMCG00001397 mRNA downstream 510834 1656248 ~ 1710333 (-) True AMCG00001397
AMCG00001401 mRNA upstream 20138 2271897 ~ 2279797 (-) True AMCG00001401
AMCG00001404 mRNA upstream 145623 2397382 ~ 2407103 (-) True AMCG00001404
AMCG00001405 mRNA upstream 250411 2502170 ~ 2503363 (-) True AMCG00001405
AMCG00001428 mRNA upstream 349067 2600826 ~ 2601227 (-) True AMCG00001428
AMCG00001427 mRNA upstream 558525 2810284 ~ 2811279 (-) True AMCG00001427
TU198157 other downstream 432325 1750051 ~ 1788842 (-) False G157339
TU198465 other upstream 970918 3222677 ~ 3259955 (-) True G157593
TU198559 other upstream 1238008 3489767 ~ 3492710 (-) True G157671
TU199110 other upstream 3125671 5377430 ~ 5379959 (-) False G158123
TU199111 other upstream 3125671 5377430 ~ 5418243 (-) True G158123
TU199135 other upstream 3191098 5442857 ~ 5443581 (-) False AMCG00001483

Expression Profile