RNA id: TU198328


Basic Information

Item Value
RNA id TU198328
length 594
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G157476
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 2510116 ~ 2512566 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGACGGTCgcacagctgtctgccaacatacttgcacACACAGAGACGAATAAGCGTATCTAcacagaagtataaatcggcctTGAGGAGAGCAGGAACAGAGCAAGCAGGAGGATAGGACCTGGCAGCAAAGCCTGAACACGGAGAATCAGCGGAGAGACTGAAGCGACACATAGAATCGGACTGATATGGAAGCAGTGCATATGAGTTGTGTAACTGCCTCTCAGCTTTAGTTAAGTTTGTGACTATTTTTTTGGTTCCTACCTAAAATTAATAGGATATCGTAGAGGCGGAACTAATTAGCGCCATCCTTGTGTTCCGCACGTAATTAAAGGGGGCACAACATCTGAAGTGTAGAGCTAAAACATAGCATCGCAAGAGCTCTCCGAGCTAAGtaaatattaagaatataaagatatctaaatgtatattatcCGAGTAAAGAAGACAAGGAAGAAGGCTTTTGAGATTTAGCCTATCCTAAGTAGGAAGCAGCCTACGAGTTCTCACGGGTTGACATGATATGTTGTTGAAATAAAACCCCGTTTTTTAACCAAGACCTCGTGCTTCGTGTTGACTACTGGAGGGAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198314 lncRNA downstream 90375 2419528 ~ 2419741 (-) True G157463
TU198225 lncRNA downstream 490252 2004131 ~ 2019864 (-) False AMCG00001396
TU198185 lncRNA downstream 602353 1907559 ~ 1907763 (-) True G157362
TU198180 lncRNA downstream 656827 1853013 ~ 1853289 (-) True G157358
TU198173 lncRNA downstream 684492 1824197 ~ 1825624 (-) True G157353
TU198330 lncRNA upstream 5056 2517622 ~ 2517976 (-) True G157478
TU198334 lncRNA upstream 32182 2544748 ~ 2545008 (-) True G157482
TU198336 lncRNA upstream 58304 2570870 ~ 2571119 (-) True G157484
TU198399 lncRNA upstream 271449 2784015 ~ 2816966 (-) True G157534
TU198400 lncRNA upstream 316702 2829268 ~ 2830181 (-) True G157535
AMCG00001405 mRNA downstream 6753 2502170 ~ 2503363 (-) True AMCG00001405
AMCG00001404 mRNA downstream 103013 2397382 ~ 2407103 (-) True AMCG00001404
AMCG00001401 mRNA downstream 230319 2271897 ~ 2279797 (-) True AMCG00001401
AMCG00001402 mRNA downstream 258357 2221167 ~ 2251759 (-) True AMCG00001402
AMCG00001409 mRNA downstream 342772 2110416 ~ 2167344 (-) True AMCG00001409
AMCG00001428 mRNA upstream 88260 2600826 ~ 2601227 (-) True AMCG00001428
AMCG00001427 mRNA upstream 297718 2810284 ~ 2811279 (-) True AMCG00001427
AMCG00001411 mRNA upstream 594629 3107195 ~ 3108027 (-) True AMCG00001411
AMCG00001413 mRNA upstream 675607 3188173 ~ 3195828 (-) True AMCG00001413
AMCG00001412 mRNA upstream 756431 3268997 ~ 3275615 (-) True AMCG00001412
TU198157 other downstream 721274 1750051 ~ 1788842 (-) False G157339
TU198465 other upstream 710111 3222677 ~ 3259955 (-) True G157593
TU198559 other upstream 977201 3489767 ~ 3492710 (-) True G157671
TU199110 other upstream 2864864 5377430 ~ 5379959 (-) False G158123
TU199111 other upstream 2864864 5377430 ~ 5418243 (-) True G158123
TU199135 other upstream 2930291 5442857 ~ 5443581 (-) False AMCG00001483

Expression Profile