CI01000005_06707248_06710543


Basic Information

Item Value
gene id CI01000005_06707248_06710543
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6707248 ~ 6710843 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_06707248_06710543.mRNA
ATGGCTATAAATATATTGTCATGGAACGTTAATGGTCTAAGTAGCCCTATTAAACGAACCAAATGCTTAGATTACCTAAGATGTAAAAGGGTCTCCATCGCCCTTATTCAAGAGTCTCATTTGAAATCAGATGACGTACATTGCTTTCAAAATAGATACTTCAAAGTGATCTCCTCATCTTCGGCTGGCAATAAGACTAAAGGAGTGTTGACACTGTCTAGGCGTTCTACTAATTTTTCAATTATACGTTCTGGTGGAGATACAGAAGGCAGAATTACCTATGTTGTTGGTTCCCTAAATAATACTAAATATGCTTTTATATCTATATATGCACCTAACGAGGGTGATCCCCTATTTTTTCAAGACGGTGATCCCCTATTTTTTTTTGACGGTGCCAGGGACTATACATTCTTTTCAGCTCGTCATAAGAGCTATTCAAGGATAGACTATTTACTTATGTCCCCTTCTCTTATTCCATTTATTAGTAAAGTTGATATTCTGCCACTTCTTTTATCTGATCATTCACCTGTAATTACTACCCTAACACCTGTATCGTTGGGCTCCAGACCCAACCGCTGGAGATTTAACACCTCCCTGTTACAGGACTGTACTTTTGTGGCTGAATTACGAAGTTCTTTGAAGGAATTCTTGCAGAATAACACGGATTCAGCCTCTAACTCTCAAGTATTGTGGGAAGCCACTAAGTGTTTTATTAGGGGTAAATGTATAAGTTTTTCATCTTTTAGTAAAAAACATAGAGAGAGTCGTAAAATTGAATTAGAAAAACAAATTGATCTGCTAGAGAAGGAATTAAATGGTAAATTTAGTGATATCAAAGCCAAAGAATTAAATGCTCTTAAATCAGAATTAAAATCTATATATTTGCATAGAGCTGAATTTATTATACATCGTACTAGGCAATCTTATTATTTCTATGGAGAACGCCCCTCTAAGCTTTTGGCTTTAAGGTTGAAGGATGGTGAATCCAAAGCCAGTATATCTGCTATTAGACATGAGGGTTTAGTGTATACTCAACCTAAGGATATTAATAAAGTGTTTGAATCATATTATCAACAGTTGTGTACTTCAGAATCCAGCACTGACCCAACAATTTTTGATTTATTCCTTAAGCATTTAAATCTCCCTAAATTGAATGATTCTCAGCGTGATATACTGGACAGTCCTTTGACAATTGAAGAATTAAAATCTGCCCTGAATTCCATGAGCAATAATAAAGCTCCTGGCTTAGATGGGATTCCCCCTGAGTTATTGAAGATATTATGGGACATAGTGGCTCCATTGATACTTAATTCTTTTAGTTTTGCTTTAGAAAAAGGTGCTCTACATAGAGACCAAAACACAGCTTTGATAACTTTACTGTTGAAGAAAGGAAAGGATCCCCTTGAGTGTTCTAGTTACAGGCCAATTAGCCTCCTATCCACAGATTCAAAGCTAATGGCAAAAGTTTTGGCCTTAAGATTGGATCGGTGTGTAGGAGACTTGATCAAGTATGATCAGTCAAGTTTTTTAAGGGGGAGATTTGCTGCATACAACATCCGTAGGCTTCTTCATATTATTCAACAAGCAGACACCTATATAGCTTCCTCTGCAATCTTCTCTTTGGATGCAGAGAAAGTTTTCAACAGAATTGAGTGGAATTTTTTGTGCAAGAGTACTTACTGGTCCCCATATCGCTTGCGTTTTAATTTATCATTAGAGCCTTTGGCCCAAGCGATTAGACAATGCTCTGCAATAGTTCCTATAAGCTGTATGAATGCAACCCATAAAATTTCACTCTATGCTGACGATATTCTTTTGAATCTATCAAATATCACAGATTCTGTTAGTGAATGCTTAAAATTATTCAATACATTCGGTAAATTGTCTGGTTACAAAATTAATTGGAGCAAATCCGTACTTCTGCCCCTTAATATAGCTGCTAAATCAGAGATTCAGGCCTTACCCACTATGATTCCAATTACCGACCAGTTTAATTATCTGGGGATTAGAGTTTTTTCTTCACTTTCACACATTGCTAAATGGAACTATCAGTCTCTTCTTGATAAGATTAAAAGCAATCTTCTGTGTTGGTCTCCACTCTGTTTGGCTCTTCATGGTAGGATAGCCACTGTTAAGATGAATATACTTCCGAGGTTGAGCTTTTTATTTTCTACCTTACCTCTGGCACCACCTATTGGTTACTTTGAAGAGCTTAATACAGTGGTAACAAAATTCTTATGGAATAATAAACAGCCTAGAATTTGTCTTAAATCTATGTACCGGCTGAAACCCCATGGTGGTTTATCGCTACCAGATTTTTGGTCCTATTATTTACCGTACCAAGTGAGACCGCTTAGGACTTGGATTGATGTTGACTCTCCTGTGTCATGGCGGGCCTTAGAAAATAATATTATTTACCCATTGCGTCTACAGGATTTACCTTTTACTGGAATACCTAAGAAGGTTTTGGAAAAGTTTGGTCCAATTATATGTCATTCTATTAAACTCTGGAAAGCAGCAGAAAAGATCATGGGAGTTTCAGATTCCTATAGCAATTCTACCCCCATTTGGCATAACAGTAACCTCTGCACATGTAATAAACCGTTTATTTCTAAATGCTGGGTTGAATGTGGTATTTATACCCTAAAAGATCTGTACAATGATTATGGGCTTAAGTCCTTTCAGATCCTACAAGTTGAATTCTCTCTCCCAGGATTTTCCTTCTTTTTGTATTTAAGATTAAGATCTGCACTAAAAGCTTATGGAGTACCCTGGTCAACTAAAATATCTCCTCACTTTATCATAGATTGGATAGACTCTAGTAGGGCTTCTAAAGGTATTGTGAGTATAATTTATAAAATACTTGTGGTACGACAGTACTCAAACATTCCGACTGAGGACTTCTGGGAGAGAGACCTTAACACCGTGATTAATTGGGACTCTGTCTGGGGGAATTGTTTTGCTACCTCAAAAAATCCGGCCCACCAAATTATTCATTATAAATTAATCCGTAAGGCATATGCCAGTCCCTGTTTACTATATAAAATGAAAAGAAAGTCTGATCCTTTTTGTCACTTGTGTAGCAGCGTAAGCCTAGGTACATATATGCATATGTTCTGGGACTGTTCCCGAATTGAGCAGTTCTGGTCTTCGGTCCGGGACTTATTGATAGATCTTCTGAAGACTCAGATCCAAAAGGACCCTCTGGTTTTCTTTTGCTAGATGACTCTTCACTATCACTGTCTGTCAATCAAAAGAGGATTCTGTCAGCTGCCCTAACTGCTGCTAAAAAGGTTATCCTGAAACTGTGGTTGGAACCATCTACCCCAGCTATGTCCACTTGGATGTCCTATTTGCTGGACATTGCTCTTTTGGAGAGCACCATTGAGACTTTATCAAAAATGTTGAAATCTTGATATAATATTTATTTTTTATTTATTAAGTCTTATTGTATCTCTTTTTCTTATGATTGTGGGCGGATCTTGGGCTCTGTTGTAAATATTTATAAACTTAAAATGTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_06707248_06710543.mRNA True 3522 mRNA 0.37 2 6707248 6710843

Neighbor

gene id symbol gene type direction distance location
CI01000005_06706460_06706909 NA coding upstream 339 6706460 ~ 6706909 (+)
CI01000005_06693330_06699068 DEGS1 coding upstream 7993 6692275 ~ 6699255 (+)
CI01000005_06668264_06682593 FBXO28 coding upstream 24557 6668046 ~ 6682691 (+)
CI01000005_06505675_06506160 NA coding upstream 200867 6505675 ~ 6506381 (+)
CI01000005_06491360_06505195 NA coding upstream 201809 6490248 ~ 6505439 (+)
CI01000005_06805919_06809589 NA coding downstream 94737 6805580 ~ 6809589 (+)
CI01000005_06809700_06812138 NA coding downstream 98857 6809700 ~ 6812450 (+)
CI01000005_06901329_06921880 TP53BP2 coding downstream 190486 6901329 ~ 6921884 (+)
CI01000005_06927239_06932095 NA coding downstream 216396 6927239 ~ 6932195 (+)
CI01000005_06954470_06955113 NA coding downstream 243627 6954470 ~ 6955248 (+)
G39838 NA non-coding upstream 40303 6666742 ~ 6666945 (+)
G39835 NA non-coding upstream 47294 6656535 ~ 6659954 (+)
G39792 NA non-coding upstream 79007 6627891 ~ 6628241 (+)
G39737 NA non-coding upstream 118966 6579221 ~ 6588282 (+)
G39764 NA non-coding upstream 151760 6552471 ~ 6555488 (+)
G39864 NA non-coding downstream 42966 6753809 ~ 6754042 (+)
G39865 NA non-coding downstream 49935 6760778 ~ 6761083 (+)
G39906 NA non-coding downstream 227680 6938523 ~ 6938754 (+)
G39943 NA non-coding downstream 314174 7025017 ~ 7027390 (+)
G40005 NA non-coding downstream 434032 7144875 ~ 7145896 (+)
CI01000005_04735429_04736817 COX20 other upstream 1970391 4735346 ~ 4737082 (+)
G37392 NA other upstream 2983745 3722744 ~ 3723503 (+)
G36291 NA other upstream 5046216 1659733 ~ 1661032 (+)
G36223 NA other upstream 5169444 1503143 ~ 1537804 (+)
G35533 NA other upstream 6183467 491908 ~ 523781 (+)
G39930 NA other downstream 286701 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 887146 7600541 ~ 7602964 (+)

Expression


Co-expression Network