CI01000005_06693330_06699068 (DEGS1)


Basic Information

Item Value
gene id CI01000005_06693330_06699068
gene name DEGS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6692275 ~ 6699255 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_06693330_06699068.mRNA
ATATATAATATAATGAGGCAATAGCAAAGGCCATAATCATAAAGTCAAGCTTAACCATCTTAACACAAAAACAGTATAAACAATGCTTCTATTCCCTGACAGTGAGGATACATTTCTTTCACTTGAAATTAAAGTGCAGTATTTGGAAACTAAAGATTGAAGTGCCACTGTATATACATATCGCTTAAATGCTGCGGACAGTAGAAGTTGTTTCCTAACCGGCTCTCTCCTGTTTGTGCTTATCGACACATTGGCGTGATGTCTTCTCAAATGAACTGTCATATTAGAAGTGTTTCCATTAGCATATTGAATGCATTTTGCACAATGCTTGCACACAGTCGCAGTTCTATCTACTGTTTTATTTCCGTTGTCGTCGTAAGTAACATGAAATCCAAAATGTTCCCACACACCGGATTTGAACGACACGGGCGCATCCGCCAACTCCGGGCAGCCTTCATTATCTCCTCCACTTGCCATTTCTGCAGCACTCCTTACTCCACTTTTACTGTCTATATGTATGTTCGCGCGAAACTGTCTGAGGCGAAACTGAGCACGGGGCTACATTGCGCATGCGTCGAACCGTGCGACGCACACACGAACCGAATCGAGACAAGCGAACCGAACGGTTCGGGTGTTTTTTCATGTACCGTGCCACCCCTAGTTTTTACCGAAGCATTTTTTTTTTTTTTTTTTTTTTTTGTGGCACACATGGCCCTCCTCATTAGTCTCTGGGGGGAAAGGATACTGCTGAAAATGCCACAGAAAACGGCACCATAACGGTTTTGTTAAAGTTAACGTAGTCAAAGCTGGCGTTTTTAGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCCGCCCTCCGCGTCAGCGTTTAGAAATCGAAAGATCTTTTTCGTCCGTGAAGAAGGAGGGCTGAATGAGAAAGGGAAGGATGTGGGACAGTCGCTGCTGTTAGACCCGTGTGAAATAACTTCTGCTCCTACATTCACCTCTTGTGCAAAAACACTTAACGCGAACCAACAACCGAGCTAGCGTAAAAATGGGCAATCGCGTAGTTCGTGAAGATTTCGAGTGGGTTTATACAGATCAGCCTCACGCGGACCGGAGGAAAGAGATTCTGGCTAAATACCCTGAGATCAAGTCTCTGATGGGACCTGACCCCAGACTGAAATGGATAGTCTGTACGATGGTTGCTGTTCAGTTTTTGGCCGCCTTTTTGGTGAAGGACTTGCCCTGGAAATGGGTCTTGTTCTGGACATATGCATTTGGGAGTTGCATAAACCATTCAATGACACTAGCAATTCATGAGATCTCTCACAACACCGCTTTCGGCAACAACCGCGCCAAATGCAACCGCTGGTTTGCCATTTTTGCCAATCTGCCCGTTGGGTTGCCTTACTCGGCATCGTTTAAACGCTACCATCTGGACCACCATCGCTACTTGGGTGGAGATGGCGTGGACGTTGACATCCCCACTGACTTCGAGGGCTGGTTCTTTTGCACCCGTTTGCGCAAGCTCATCTGGATAATGTTCCAGCCCCTGTTCTACGCCATCCGTCCCCTCTACATCAACCCCAAACCCATCAGTCAACTAGAGATCATTAACACTGCCGTACAGCTCGCGTTCAATGCTCTCCTCTATTGGGTATGGGGTGCCAAGCCCTTGGTCTATATGCTGATGGGCTCATTGTTAGGAATGGGTCTCCATCCCATCTCAGGACACTTCATTGCTGAGCATTACATGTTCCTCAAAGGCCATGAGACCTACTCTTACTATGGATCCCTCAACCTGCTGACTTTCAACGTCGGGTACCACAACGAGCACCATGACTTCCCTAGCATTCCAGGATGCCGACTGCCGATGGTAAGAGGAGTTATTCCACTTCATGTTTGCAAAGCCAGATCAGTCCATTTCAATAGTTAAATAATTATTGAAAACTTTTTGATGCCCCCCAAATATGACAATCCCCTTGTCAATATAGACCAGTAGGTAGCGGATCTGAAGTCAAACTGGTGCTTCAGTAAGTTGGAGAAGCACTGAAGGCCTGCTGTCTTGTCTTTAAAAAGGACTCTCCTCAACCATGTTAAAACAGGCTAAAACAATTCATGAA

Function

symbol description
degs1 Predicted to enable sphingolipid delta-4 desaturase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to act upstream of or within sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural crest; notochord; pronephric duct; and yolk syncytial layer. Used to study hypomyelinating leukodystrophy. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human DEGS1 (delta 4-desaturase, sphingolipid 1).

GO:

id name namespace
GO:0030148 sphingolipid biosynthetic process biological_process

KEGG:

id description
K04712 DEGS; sphingolipid 4-desaturase/C4-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_06693330_06699068.mRNA True 2127 mRNA 0.46 2 6692275 6699255

Neighbor

gene id symbol gene type direction distance location
CI01000005_06668264_06682593 FBXO28 coding upstream 9584 6668046 ~ 6682691 (+)
CI01000005_06505675_06506160 NA coding upstream 185894 6505675 ~ 6506381 (+)
CI01000005_06491360_06505195 NA coding upstream 186836 6490248 ~ 6505439 (+)
CI01000005_06478442_06481075 GSTA.2, GSTA.1 coding upstream 210886 6478191 ~ 6481389 (+)
CI01000005_06439978_06442729 GSTA.1 coding upstream 249302 6439743 ~ 6442973 (+)
CI01000005_06706460_06706909 NA coding downstream 7205 6706460 ~ 6706909 (+)
CI01000005_06707248_06710543 NA coding downstream 7993 6707248 ~ 6710843 (+)
CI01000005_06805919_06809589 NA coding downstream 106325 6805580 ~ 6809589 (+)
CI01000005_06809700_06812138 NA coding downstream 110445 6809700 ~ 6812450 (+)
CI01000005_06901329_06921880 TP53BP2 coding downstream 202074 6901329 ~ 6921884 (+)
G39838 NA non-coding upstream 25330 6666742 ~ 6666945 (+)
G39835 NA non-coding upstream 32321 6656535 ~ 6659954 (+)
G39792 NA non-coding upstream 64034 6627891 ~ 6628241 (+)
G39737 NA non-coding upstream 103993 6579221 ~ 6588282 (+)
G39764 NA non-coding upstream 136787 6552471 ~ 6555488 (+)
G39864 NA non-coding downstream 54554 6753809 ~ 6754042 (+)
G39865 NA non-coding downstream 61523 6760778 ~ 6761083 (+)
G39906 NA non-coding downstream 239268 6938523 ~ 6938754 (+)
G39943 NA non-coding downstream 325762 7025017 ~ 7027390 (+)
G40005 NA non-coding downstream 445620 7144875 ~ 7145896 (+)
CI01000005_04735429_04736817 COX20 other upstream 1955418 4735346 ~ 4737082 (+)
G37392 NA other upstream 2968772 3722744 ~ 3723503 (+)
G36291 NA other upstream 5031243 1659733 ~ 1661032 (+)
G36223 NA other upstream 5154471 1503143 ~ 1537804 (+)
G35533 NA other upstream 6168494 491908 ~ 523781 (+)
G39930 NA other downstream 298289 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 898734 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location