XLOC_005672 (fbxo28)


Basic Information

Item Value
gene id XLOC_005672
gene name fbxo28
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 482911 ~ 490569 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011275
GAGAAGATGGCGGCTGTTGTCGTGAGCGCTGACGGAGGAGTGTCTCCGGTGGATTCGGGCTCGGTGTCTCCGCGTCTGCCTTCGCCGTCGCCAGTACCGGAGCAGCAGCAACAGAACAACCCGCTGCTCGGGCTGCCGATCGTCGCCATCGACACCATCCTCAACTTCCTGACCTATGACGAGATCAGCCTGCTGAGACTGGTGTGTAAGCGCATGGACATGATCTGTCAGCGTATGCTCAATCAAGGCTTCCTGAAGGTGGAGCGTTACCACAGTCTGTGCCAGAAACAGGTCAAAGCGCAGCTGCCCAGGAGGGAGTCGGAGCGCAGGAATCACTCGCTGGCGCGTCACGCAGATATTTTAGCGGCGGTGGAGACACGTCTGTCGCTGCTCAACATGACCTTCATGAAATACGTGGACTCAAACCTCTGCTGCTTCATTCCTGGAAAGGTGATCGATGAGATTTACCGTGTTTTGCGGTATGTCAACTCCACGCGTGCTCCTCAGAGAGCCCATGAGGTGCTGCAGGAGCTGCGGGACATCTCCTCCATGGCCATGGAGTATTTCGATGAGAAGATCGTCCCCATCCTGAAGAAGAGGCTTCCGGGCGCTGATCTCTCCGGACGCCTCATTGGATCCGCTCCGGTGGCCGGTCCGTCCACCTCTCTGACCACCATGTCTCTGCTGGCCAAGAACACGCCGTCGCGCTCGGAGATGACGAAGCTGCAGCAGCAGGTGAAGGTGAACGGCGCCTCCATGACGGCTCTGCGGCGCGAGATGCAGGAGGTGCGTCTGAAGCAGCTGGAGCAGCAGAAGCAGCTGCAGGACCAGGAGCAGAAGCTGCAGGAGCAGTCGCAGGTCATCGGGGAGCAGAACGCGCGGCTGGCCGAGCTGGAGCACAAACTGCGGGATCTGATGGACAGAGCGGTGGGCGCCGGAGATCCAGACGCCGCTGCAGCCTCCAGCCAGAGTTTGTGTGTGAAGCGCCGCAGCTGCTCCGAGCTCCCGCGACACTCCAAACGCCTGCGCAGCAAGAAGTAG

Function

symbol description
fbxo28 Predicted to be involved in protein polyubiquitination. Orthologous to human FBXO28 (F-box protein 28).

GO:

id name namespace
GO:0000209 protein polyubiquitination biological_process

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-4665 Predicted to be involved in protein polyubiquitination. Orthologous to human FBXO28 (F-box protein 28).

Ensembl:

ensembl_id ENSDARG00000027159

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011275 True 1041 mRNA 0.60 5 482911 490569

Neighbor

gene id symbol gene type direction distance location
XLOC_005670 CABZ01061569.1 coding upstream 44449 438347 ~ 438462 (+)
XLOC_005669 lgi1a coding upstream 52768 421231 ~ 430143 (+)
XLOC_005668 CU570800.2 coding upstream 65283 416648 ~ 417628 (+)
XLOC_005667 CU570800.3 coding upstream 70294 411607 ~ 412617 (+)
XLOC_005666 CU570800.4 coding upstream 75266 406635 ~ 407645 (+)
XLOC_005673 degs1 coding downstream 11661 502230 ~ 514843 (+)
XLOC_005674 wu:fc17b08 coding downstream 43884 534453 ~ 545653 (+)
XLOC_005675 NA coding downstream 63022 553591 ~ 560985 (+)
XLOC_005676 tp53bp2a coding downstream 156131 646700 ~ 664472 (+)
XLOC_005677 CU462915.1 coding downstream 178608 669177 ~ 670746 (+)
XLOC_005661 NA non-coding upstream 213594 268042 ~ 269317 (+)
XLOC_005659 NA non-coding upstream 240292 242088 ~ 242619 (+)
XLOC_005656 NA non-coding upstream 273179 202760 ~ 209732 (+)
XLOC_005653 NA non-coding upstream 459736 20646 ~ 23175 (+)
XLOC_005685 NA non-coding downstream 368488 859057 ~ 861896 (+)
XLOC_005687 NA non-coding downstream 482440 973009 ~ 986263 (+)
XLOC_005701 CABZ01044297.1 non-coding downstream 1274938 1765507 ~ 1765622 (+)
XLOC_005705 NA non-coding downstream 1492742 1983311 ~ 2033043 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_06668264_06682593 FBXO28 coding CI01000005 null 6668046 ~ 6682691 (+)
bowfin (Amia calva) AMCG00001786 fbxo28,LOC106606749 coding CM030143.1 CM030143.1 15788706 ~ 15796435 (+)