XLOC_005687


Basic Information

Item Value
gene id XLOC_005687
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 973009 ~ 986263 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013534
TCtatatataataaatctatttaGCTGTTTGTTAAAGCACTTGAGTGATTACGACAATAATGTTCCCTTTTTGGTTCGGGTGATACGAACGTCTTAGTTATTGTGATGCAAGAAGTCATTCAAATCTATAAAATACACTGTTTTTGTGTGGGTAAAATCAGTGTACAGTGTAGAAAGTGATTAAACCCGTTGCCTTAAAGTCAAGaagttgacttaaaaaaatagtGAGTAAAGCTGTTGTAACTTAGAACTGTTCAGTAGAtttaacatacatttttagaaatgaTGCATattcacataattttttttaaggcaACAGGCAAACAAGCACAAAAccgtcttgtttttagaaataatcaactcaaaattaagtgtttttaagtaaaacaagcagaataatctgtaAAATGAGATGAGCGAAATTATCTTGTCAACATAAAAAACACGATtatttttcttccattttttttccagattattttgcttgttttaaggaaaaaactcacTTTAATTTCGACATTATTTCTTAAACTAGACAGTATTTTGTACtagtctagaaaattcttcttgatttctgaatttttagatatttagactagaaacgagACCAACTTAAAGTAAGaaaatttgtcttttttgtttctaaatgaaatAAGTAACACAactcaacaaacacacacacttttcctACGTTTGATTTCGAtgtttatttggtttattatttGATACACGTCAAGACTGCTGATCAATGCCGGAATCCTGAATTGAACACAATATAGCAAATAAAACTCTAAACATTTGCTGTATGAGCTGAGGGTGAGGGAGGGTGATTGTGTACATGTCAATCAGGGTGTAGCTGAATGGCTCCGTTCCAGAACCTAGTGAGCTAGCTATATAGGCAGCATTTTAGGGCATCAGGTGTGCTCCCGATGCTAAACTGGCAGGAAGATTTCCACTTACTGCATTTGAACATAGCAGGATTTAAAAGTGGCAGCATTGCAAATAAGAAGGCAATTCCTGAGGGGGGAAAACCCATCGAAGATGTTTGACAAAACAAGGGGAAATCCAGAAtagaaaataaaacttaaatagctcaaaggggtagttcacactaAATAAACTCTGTGTTCTTGTACTCATCTTGTTCCAAACATGCTTGAGTTTCTATTTCTGCTAAACACAATGTGCTGAACATTGCTGGAGGGaaagtcattgacttccatagtatttcttttGTGTGAATGTCAATGGCACCCAAacattcttctgaatatcttattttgtgctcaTAAATTGTGACAACCACCTGAGTCTTTGTAAATGACGAGGGGAATtggcatttttgagtgaactgtccctttaacaacgTTAACACCACACTATTTTCGTGAACTCGTGAATTGTAGAGCACTTAAAATCCGACACTTATTCTGAAGTTGTGTTTGTGTAGCACTAGCAGGCAGCTTGCTAGGTTTTGGAATAGAGCCTGTGAATCCAATTGAAACTGGCCATTGATGTTCTCCTGCTTTGATTCttgctgggttcacaccagacgcaaaGCCCAATCTCATGATGTTTTAAGCAATGTCAGAAAAGTTGCTAACTCTTGGGATTTCATCTGgcttgtatgattttaaaagggAGGTGTGCCCCCAAACCTCACTCCTAAATCTACCTCTCATTGTGGGATGAGCAGAtcttactaaaatgtatgaactaAACCGTACAAGTTAAGCCGTGGTTGAACATGGCAGACCTTAAGCACACATTGTGCACGTCTCTGCATTTGAAAGTTCCGTTTTGGTAAACTCCGACCTGCGATTTCACATCTCGTGATTGTGTGAGGCCAATAGAAGATCTGAACgtgcataaatgtaaaatatggagcaatggTTTGCTTTAACCGGGTCGCATCTTGTTTAATCCACTGCTTTTTGCAGCACGGCTTTTGCACGCTCAAACTTAAATGTGACCGCGGCTTTAATATGAACTATAGCTACCAAATCAGAACGAATTGCAATCAGATTGCCTTGCACCACTCGCAGATTGTTTTCCCCTTCATCAATTTTAAATCCTGCAAGACGAGTATTCTGCAAAATTAGTGCAGCATGTCAATACTTCGCTCTGTATTTGTGCTTATATTGACTTTGTGTTTCTAATGTATGTAAATATAGACAATGGTAGAAATTAAGCCGCAGTCACACTGCACATTTCACTCCACCGACTTGCATTAATATGCATGCGAATGCAGCAAACGGAGACTCATGTCGGACACGCATGTTTCTGCATTAGAAATTTTaatttggtgaactctgacctgcgattTCACATCATGCGATTTTTGTGAAGCCAATTGTAGATCAAATTGTGACCCCTATTTTGCATAATTTAAATAACGTAGCAATCGTTTGCTTTATCAGTATCGCATCTTTTTGTTTATCCTGCCCCTATTTGAATGGCGTCTGATAGAACTTTGCAGGCTTTAATGTGAATTAGCCACTACATTAAAAAGTTCCAATTCCGTAAGGTCGTCACTTGCTCTGGtttactcacaggatgttttttttACCTCCACCAAttttttggtttaatttgtaAGTTTAAGTATTTAAAATCCTGCAAATTTCAGCATCGATTGTGTCACAcattaataattttgtgtttatattgaCTTTGTGTTTCTAATGAGAAACCTCTGTGAGATTGCATTGCGTCACTTGCTCTAGTTTACTCATGGAATGTTTTTTCCTCCACCAATTTTTTGGGTtggacagcctgatctcacgagaaaacgtaagtattttacgttttggcagtttagtggctaatacgtacgaattcgtacgagttcagtcgtaagaaaatgtacgattttaaaaaggaggcgtggcacctaaccccacccctaaacccaaccgtcattgggggatacgcaaatcgtactaaaatgtacgaattagattgtacgaatttgtacgaattagccactaaatgaaaaagttacgaattgccgtgagattgtgttgggttggattatttatattaaaacactTTGCCTCAATCACATCTAATGCGCaggtttaaaaatgtaatcctGCACTACAAGTATTCTGCATTTGTGTTTATGTTGACTGTGTTTCTAATGTATGTAAATACTGTCAATCGTACAAATTAAGCCGCAGTCACACTGCATTTTTCACCCCATTGAGTTCCATTAATATGCGTGCAAATGCGGCAGACTGGACACGGAAACTCATGCAGAAAGTTGTACATGTCGCTGCATTTGAAATTCTAATTTGGGGAACTCTGACCTGTAATTTCACGTCACATGATTGTGCAAGGCTAATAGAAGATCTAAATGTGACCCctattttgcataaatttaaaatatggagcaatcgttTGCTTTGTCGGTGTCGCATTATCAAGTTTCATCTCGCCATTTTTGCATACTCAAACCCTATTGCGACCGAGACTTtaatataaattagccactacaAGTTCCATATCGCCGTGAGATTGTCACTTGCTCTGGtttactcacaggatgtttttttttccctccaccAATTATTTTTGGtggatttttaatatttaaacatttggaATTTGCCTCAATCACATCTAATGTGCAGAATTGTAATCCTGCACGACACGTATTCTGCATCTGTGCTTCTAATGTATGTAAATTGACTATTGTACATATTAAGCCGCGGTTACACTGCACTTCTCCCCATTGAGTTCCAATAATATGCACGCGAATGCGGCAGACATTAAAACGGTTTCAAAATTACATTTTGGATGTAATTTACAAGCACAAATACTTAATTTCACGTtcagtgtgaacccagcattaataaatcaaaatatcatTTTGCATGAGCCAGGGAGATGTTTACAATCCCAAGTTTTCAGACAGTAAAGGTCCAAGAGGTCAACATCAGCAcctaacagttgaagtcagcattattcaCCCTCCTCGGTATTTTAATCCTCTGTAaggatgttgaacagattcaggagttgttcaaagtgtttcctctaatatttgttcttctggagaaagtcttgttttatttcggctagaataaaagcagttcttaatttttgtaaagccattttaaggtcaatattattcgccccctttagtaatattagtgttggattgaaaccactgttacacaatggcttgcctaattaccctaattttaccctaattaccctagttaagcctttaaatgtcactttaagctgaatacgagtatctagttattagaaatgagttattaaactatcatgtttacaaatctgttgaacagaaattgagggggAAATATATACAGGAGGGGGAATAACTCAGACTTCAGCTGTAGGTAATCTGGAAAGTAAAGCAGGATTGCACTGAGCTCAGGTGGATCGATCACCGTGCTTCTTTCTGCTGGTTTTCTCGATCATGGTCTCCACCACCGTAGTGGTCTCTTCATAGCCTTTGACTTTCTTATCAGGCGAGAGCTTCTCCACCGACTCCACCACCTCCACCTTCTCATAGCTCATTGAATCGGGCGGGATGGAGCTGTAAGATGGCATGGGCGGAGGTTCACTGGGATCCTTATTTCCTCCACGATGGGGTGAAGGTTGCctaggaggagccggagccggttCTGGTTCCTTCCCCTTTGGATGAGGCTCTCCTTTTTTAGATTTACCTCCATCGTCATCTTTTCCAGGATCTGAAGGTGGTGCTGGAGGTCCCGGTTGGGGGCTAGGTTTGGGTGTGCCTCTCCTGTACGAATCGTAAGGCATCATGTCATCCCTAATAGTCACGAATACATGACTAGCGGAAGGGGTGGTGGAGACAAAGCATGGGTCGAGATAGCTGGAGTCTCCGGTCACCAGCACGTATCGTCCCTTGGTGAAGAAGTCGGCGATGGGTTCTGGCCTCCTGACGCGGCGCATGCGGTCCCGGATGATGTTGCAGAGCGTGTCGAAGGCTTTGCTGATCTGCGCTCCGTCCGGGACGTCCTGACGCTCCTGTTTTGGCGCCTCCTGCTGCTGATCCTCCATTGTCAGCCCTTTCTCCTCCTCTTCCAGCTCTTCTGCTGGTTTCTCCTCCAGCCCGCCGCTCGCTCCTCGAGATGTGATCTCTTTCTTTTTAAGCACCTTCTTAGCAAAGTACTTCTGACGGGGCTTCACGTTGGTGATGTCCTGAATGACTTGGGTGATATCTGG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0061448 connective tissue development biological_process
GO:0001501 skeletal system development biological_process
GO:0051216 cartilage development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013534 True 5229 lncRNA 0.40 2 973009 986263

Neighbor

gene id symbol gene type direction distance location
XLOC_005685 NA coding upstream 111113 859057 ~ 861896 (+)
XLOC_005684 gsta.1 coding upstream 120503 844143 ~ 852506 (+)
XLOC_005683 AL929536.3 coding upstream 132222 835390 ~ 840787 (+)
XLOC_005682 gsta.2 coding upstream 140678 829585 ~ 832331 (+)
XLOC_005681 nrxn1b coding upstream 161733 733027 ~ 811276 (+)
XLOC_005688 prokr1b coding downstream 29486 1015749 ~ 1025224 (+)
XLOC_005689 cnrip1b coding downstream 103679 1089942 ~ 1097017 (+)
XLOC_005690 ppp3r1a coding downstream 113934 1100197 ~ 1120773 (+)
XLOC_005691 wdr92 coding downstream 145485 1131748 ~ 1141171 (+)
XLOC_005692 perp coding downstream 169273 1155536 ~ 1170695 (+)
XLOC_005671 NA non-coding upstream 268671 471548 ~ 704338 (+)
XLOC_005675 NA non-coding upstream 412024 553591 ~ 560985 (+)
XLOC_005670 CABZ01061569.1 non-coding upstream 534547 438347 ~ 438462 (+)
XLOC_005661 NA non-coding upstream 703692 268042 ~ 269317 (+)
XLOC_005701 CABZ01044297.1 non-coding downstream 779244 1765507 ~ 1765622 (+)
XLOC_005705 NA non-coding downstream 997048 1983311 ~ 2033043 (+)
XLOC_005706 NA non-coding downstream 1163507 2149770 ~ 2153016 (+)
XLOC_005708 CR376766.2 non-coding downstream 1366026 2352289 ~ 2352995 (+)
XLOC_005710 CR376766.1 non-coding downstream 1400150 2386413 ~ 2386533 (+)

Expression


Co-expression Network