XLOC_005692 (perp)


Basic Information

Item Value
gene id XLOC_005692
gene name perp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1155536 ~ 1170695 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011297
TTAACACTCGACCAGAACACACGCTTTACACTCTATCAGAAGCATAATGTTCCGGTGTGGGATCGACTACACGCGGTGTCGGTGGATCTTGCCGATGCTGCTGCTGTTCGCCATTATATTCGACATTATCGCGATCGCGGCGCAGTCCGGCTGGGTGGAGGATCAGGACGCTAAAACACACTACGCCAGCATGTGGAAGCAGTGCCGAGGCCGCAACGACCAGTGGGACTGCAAATCCCTCATGGAGTTCTCTTGGGCTCAGGCTGTAGCTGCTCTGATGATCATCGGcctcatcatcctcatcttcgCCTTCATCATCTCATTAGTGGCACTGTGCTCTACCGTCAACGTCTCTCTGCTGCCCTTCATCGGACTACTCCTCATCCTGGCTGtAATCGTGCAGATCATCGCTCTGATCATCTACCCGGTCAAGTTTAACGAGCAGATCTACGAGGGTTATTACGACTACACGTGGGCTTACGGTTTCGGCTGGGGCGCCACAATCCTGACGCTGGGCTGCGCGATCCTCTTCTGCTGCCTGCCCCGCTACGAGAGCGAGATCACCGGCCTTGAAAAGACCAAATACATCTACCAGTCTGGCtaagagaaaaacacacacaacacacctgAGAAAGGACAGTCTCACACACCACTCCAGCATGAGGAACACTGAGAGAGCACCAGCATtaactaaaaacacacacaaaacggCGTCTGTGCTGAGAAAATGGCCTTTTTGACTCACTTTTGCTGCAGTTATGCttcattttaagtcattttattgtttttcatgtttttttttcatttaaagggaTTGCACACCCCAaatctttgggtgaactgtccctttaacaggtATACATGCATCTCTCCCATAGTTAATTCTGATAtgtggaaatatatgcaaataactTCTATAATATACAAGAAAATAGGCCTTTTTGACTCACTTTTGGCGCAATAATGCTTAATTTTAATCCGTTTTAatcctttttattatttgttcatgcACGTAAACtggacatttaaagggatagcgcACCCAAAAGTGAAACTAAATTCactatttattctccctcatgtgttttcatgagtttctttcctctgttgaatgcaaaggaagatatttagaaaaaatgtGGAGAAAAGCAACCATTGGCTATTATAATAGGACAAAAAAATGttactgttgaagtcaatggGTGCATTTCTGAGGtaacattttagggtgaactgtccctttaacaggtATACATGCCTCTCTCCCATTGAGAAATCTGAAAGGTGGAAAAATATGCAGATTACATGTATAATATGCAAGAAAACGGGCCAATTTGACTCACTTTTGGGGCAATTATGGTTCATTTTAgtcagtgtttatttttattcattcgcAAAGTGTGTCATTTAAAGGGATATCGCACCCAAAATGAAACTAaattcatcatttattctccctcatgtgagtgtcttttttctgttgaacacaaaagaagatatttagaaaaatggtgGAGAAaagcaaccattgacttctatagtaggacaAAAAGGTACCATGGGAGTCAATGGGTGCATTTTAGGTGagatttttggggtgaactgtccctttaacaggtATACATTCATCTCTCCCATAGAGAAATCTGATAGGTGGAAATATATGCACATTACATCTTTGACATACAAGTACATGGGTCCTTTTGACTCACATTTGGGGCAATTATGcttcattttctgtcagttttttattatttttttattaatattcattcacaGAGTGTGTCATTTAAAGAGATAgcgcacccaaaaataaaactaaattcatcatttattctccctcatgtgaaTGTCTTTCGTCTTTTGAATgcaaaggaagatatttagaaaaatgggggagaaaagcagccattgacttttatagtaacacatggaagtcagtgggtgcATTTGTAGGTGAGATTTTTGGCGTGAACTGTCCCTCTAACAGGTATACATGCATCTCTCCCATAGTTAATTCTGATAGGTGGAAATATATGCACATTACATGTGTGATATGCAACACAAATGGCATTTTGTCTCACTTTTGGGGCAATTGAGGTTCATtttagtctgtttttatttcatttattcgcAAAGTgtgtcatttaaagggatagcacACCCAAAGTGAAACTACATTCaacatttattctccctcatgtgagtctctttcttctgttgaacacaaaagaagatatttagaaaaatggtgGAGAAAAGCAGCCACTGACATAAATAGTAGGAcaaaaatactattgaagtcactGAGTGCATTTTGGAGTAAACGATGGaacatttttgcgtgaactgtccctttaacaggtGTACATTCATCTCTTCCATATTGAAATATGATACGTGTTAATATATGCAAATTGATTATATCTCATATtcaaattttatatattaatttcataTATAAAACATGTATAGTCATATATGAACACACATTATGGCTAACATATACAtgcatattatttataatatatatttacaattcaAATGGTTTAAAtggtttatataaataataaaattatttttaaaaaagtcatttttgtattattttaaaatatatgttgcatatatactTGTACGTCATATATGTAATTAGCATATATTACCATATATCAAGATTTCTGTGTGTGTTATGTATTTTCTTTAGCTGTTTGTGGCATATGACTTGTAAAAATTAATTTAGGAAGTACAGTAATCGCATTATTATGTAGTTTCTGGATGCATGAATTGACGCTGTAACCTGCTGTGTGAAGTGCGACTGAGAGTTTTGTTGTTTGTATATTTTCTTGAACTTCTCTTCATATTAACATTGAGATTTTTGACGATGTAACTGTGCTTTATATTAATTGATGCATCATTCCATGTGCTGGacgtcattgttgttgtttagaCATGCAGATTTATTGCACATTTCCCTAAAGTTATCTCACTGTTGGAGCAGAATGTGTATATTTGAGTTTTTTGTCAGTAAATAAGGAGTTTTAACCTTGAGGTGcttaaaaacactaaataaatgaCTGTCATCCTGACAGTACGCTTTTCTtagacaaataaatgtaaaacaatttaatacCAATTTAAAGAAGTCTATTTTAGCTGTAAACTTTGTAGGTTTTTGAAGCTTTTTTCTAGAGTTTTCACTGTTTTGTGGTTCTCTGTGATCTGAATTGTAAACCATTCTTTAATAAAAGGGAGTTTTGCAATGAAA

Function

symbol description
perp Acts upstream of or within apoptotic process involved in blood vessel morphogenesis; regulation of apoptotic process; and response to UV. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Is expressed in several structures, including EVL; axial chorda mesoderm; digestive system; epidermis; and nervous system. Human ortholog(s) of this gene implicated in erythrokeratodermia variabilis and mutilating palmoplantar keratoderma with periorificial keratotic plaques. Orthologous to human PERP (p53 apoptosis effector related to PMP22).

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0009411 response to UV biological_process
GO:1902262 apoptotic process involved in blood vessel morphogenesis biological_process
GO:0005911 cell-cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04115 p53 signaling pathway

ZFIN:

id description
ZDB-GENE-050104-1 Acts upstream of or within apoptotic process involved in blood vessel morphogenesis; regulation of apoptotic process; and response to UV. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Is expressed in several structures, including EVL; axial chorda mesoderm; digestive system; epidermis; and nervous system. Human ortholog(s) of this gene implicated in erythrokeratodermia variabilis and mutilating palmoplantar keratoderma with periorificial keratotic plaques. Orthologous to human PERP (p53 apoptosis effector related to PMP22).

Ensembl:

ensembl_id ENSDARG00000063572

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011297 True 3265 mRNA 0.37 3 1155536 1170695

Neighbor

gene id symbol gene type direction distance location
XLOC_005691 wdr92 coding upstream 14365 1131748 ~ 1141171 (+)
XLOC_005690 ppp3r1a coding upstream 34763 1100197 ~ 1120773 (+)
XLOC_005689 cnrip1b coding upstream 58519 1089942 ~ 1097017 (+)
XLOC_005688 prokr1b coding upstream 130312 1015749 ~ 1025224 (+)
XLOC_005687 NA coding upstream 169273 973009 ~ 986263 (+)
XLOC_005693 tnfaip3 coding downstream 11562 1182257 ~ 1208930 (+)
XLOC_005694 ifngr1l coding downstream 186857 1357552 ~ 1374927 (+)
XLOC_005695 rab23 coding downstream 211258 1381953 ~ 1395002 (+)
XLOC_005696 si:ch211-165e15.1 coding downstream 259399 1430094 ~ 1534879 (+)
XLOC_005697 CABZ01044277.1 coding downstream 364816 1535511 ~ 1543927 (+)
XLOC_005685 NA non-coding upstream 293640 859057 ~ 861896 (+)
XLOC_005671 NA non-coding upstream 451198 471548 ~ 704338 (+)
XLOC_005675 NA non-coding upstream 594551 553591 ~ 560985 (+)
XLOC_005670 CABZ01061569.1 non-coding upstream 717074 438347 ~ 438462 (+)
XLOC_005701 CABZ01044297.1 non-coding downstream 594812 1765507 ~ 1765622 (+)
XLOC_005705 NA non-coding downstream 812616 1983311 ~ 2033043 (+)
XLOC_005706 NA non-coding downstream 979075 2149770 ~ 2153016 (+)
XLOC_005708 CR376766.2 non-coding downstream 1181594 2352289 ~ 2352995 (+)
XLOC_005710 CR376766.1 non-coding downstream 1215718 2386413 ~ 2386533 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G32683 NA non-coding NC_035899.1 CM008302.1 72652355 ~ 72652779 (-)