XLOC_005695 (rab23)


Basic Information

Item Value
gene id XLOC_005695
gene name rab23
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1381953 ~ 1395002 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011303
GTATTTTGAAAGTTCTCTAGTGGTGGTCGACGTATCGATATGCCAGAGTCTCCCGCTTCCCGCAGCCGCCGCACCGTTTAACGGCCCGCCAACCGACAACCGGACACTGTCTCCGTTCATCCCAGCACATCCATATCCCGGAGCCCATTTAACGGTGAATTACCGGTCTGTAGCGGCTCTAAGACGGAGAGAAACGGACGGAGGAGGAGGCCGCCGCCGCTCCTCCGCTGAACAGCGGTTTCTGGATTTCTCGCTCTCATAAACTGCAGGCTCTGCTGATCATCATCTGGTTTTCGTAATTAATATTCTCCTGTCGATATTCAAGATGAAACAACGTAACCTGGAAACACTAACACAGTTGTGAAGAGCAGCCGTCATCACAGCGCAGTCATGCTGGAGGAGGACATGGAGGTGGCCATCAAGGTGGTGGTGGTGGGAAACGGAGCGGTGGGCAAGTCCAGCATGATCCAGAGATACTGCAAGGGCATCTTCACCAAGGACTACAAGAAGACCATCGGCGTGGACTTTCTGGAGAGGCAGATCATagtgaACGGCGAGGACGTCAGACTGATGTTGTGGGACACGGCGGGGCAGGAGGAGTTTGATGCCATCACTAAAGCTTATTACAGAGGAGCTCAGGCCTGTGTGCTGGTTTTCTCCACCACCGACAGAGAGTCATTCGAGGCCATCAGCAGCTGGAAGGAGAAGGTGGAGATGGAGGTGGGCGACATTCCCACTGTCCTGGTGCAGAACAAAATCGACCTGCTGGACGACACCGTCATCAAGAATGAAGAGGCTGAAGGTCTTGCTAAAAGGCTGAAGTTGAGATTCTACCGGACGTCAGTGAAGGAGGATCTGAATGTCAATGAAGTTTTTAAGTATCTAGCTGACAAATATCTGCAGCGACTCAAGCAGCAGTCAGCGGAGGAGACGGACATCATTCACACATCCAGCAATAAAATAGGCGTCTTCAACACAACAGGCAGCGGTCATCCAAACCAGAACAACAGCGATTTGAATGGCAGAGAGATCGTAAACCTGCGACCAAACAAGCAGCGGACGAAGAAAACGAAAAACCCCTTCGGCAGCTGCAGACTCCTGTAGAGCCCCACACCACAGATGCATTGTGGGCTTCATTCACGCTAACTGCTAAAGTCATGTTCAGTGCAGAGCAggtctgtcattgtgtgtgtgtgtgtgtgtgcgtaggtgtgtgtgtgtgagtgtgtgtgtgttggcgctcTCTTCTGGCCACACAGAGAAAAACACTAAGAAAAAAGACTAGATTGTGAGTTTTTGCACGGATAGAGGCATCAAAACTGACCCCATAATGAAATCTAATATGCATTAGTGGCTCAGAAATGATCATGATCCTGAAAATCGAATCTGCAGTGAGCGACGGCGAATCTGAGGTCTGTTCAGCTTATTTTTGTATTGACCTGTAAATCTGTCAGACGCTGCCCTCGCTCACGTTTTAACAAGTCAACACTTAATTAAAAAAGCGAATCTATTTTTCTCACA

Function

symbol description
rab23 Predicted to enable GTPase activity. Acts upstream of or within determination of left/right symmetry. Predicted to be active in autophagosome and endosome membrane. Human ortholog(s) of this gene implicated in Carpenter syndrome. Orthologous to human RAB23 (RAB23, member RAS oncogene family).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0000045 autophagosome assembly biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0071910 determination of liver left/right asymmetry biological_process
GO:0035469 determination of pancreatic left/right asymmetry biological_process
GO:0007165 signal transduction biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005776 autophagosome cellular_component
GO:0012505 endomembrane system cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-050522-328 Predicted to enable GTPase activity. Acts upstream of or within determination of left/right symmetry. Predicted to be active in autophagosome and endosome membrane. Human ortholog(s) of this gene implicated in Carpenter syndrome. Orthologous to human RAB23 (RAB23, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000004151

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011303 True 1521 mRNA 0.50 7 1381953 1395002

Neighbor

gene id symbol gene type direction distance location
XLOC_005694 ifngr1l coding upstream 7026 1357552 ~ 1374927 (+)
XLOC_005693 tnfaip3 coding upstream 173023 1182257 ~ 1208930 (+)
XLOC_005692 perp coding upstream 211258 1155536 ~ 1170695 (+)
XLOC_005691 wdr92 coding upstream 240782 1131748 ~ 1141171 (+)
XLOC_005690 ppp3r1a coding upstream 261180 1100197 ~ 1120773 (+)
XLOC_005696 si:ch211-165e15.1 coding downstream 35092 1430094 ~ 1534879 (+)
XLOC_005697 CABZ01044277.1 coding downstream 140509 1535511 ~ 1543927 (+)
XLOC_005698 CABZ01044281.1 coding downstream 147491 1542493 ~ 1552927 (+)
XLOC_005699 DST coding downstream 180274 1575276 ~ 1719930 (+)
XLOC_005700 zmp:0000000760 coding downstream 331951 1726953 ~ 1786145 (+)
XLOC_005687 NA non-coding upstream 395690 973009 ~ 986263 (+)
XLOC_005685 NA non-coding upstream 520057 859057 ~ 861896 (+)
XLOC_005671 NA non-coding upstream 677615 471548 ~ 704338 (+)
XLOC_005675 NA non-coding upstream 820968 553591 ~ 560985 (+)
XLOC_005670 CABZ01061569.1 non-coding upstream 943491 438347 ~ 438462 (+)
XLOC_005701 CABZ01044297.1 non-coding downstream 370505 1765507 ~ 1765622 (+)
XLOC_005705 NA non-coding downstream 588309 1983311 ~ 2033043 (+)
XLOC_005706 NA non-coding downstream 754768 2149770 ~ 2153016 (+)
XLOC_005708 CR376766.2 non-coding downstream 957287 2352289 ~ 2352995 (+)
XLOC_005710 CR376766.1 non-coding downstream 991411 2386413 ~ 2386533 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location