XLOC_005696 (si:ch211-165e15.1)


Basic Information

Item Value
gene id XLOC_005696
gene name si:ch211-165e15.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1430094 ~ 1534879 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011304
ATGATCGCTGCGGCTTTCCTGGTCTTATTGAGACCCTTAAGTCTTCAGTGTGTGTtattgctgctgctgcttttaatAGGAACTATCGCCACCGTGCTCTTTCTGTGCTGTTGGCACCGCAAGCTCCGCAATGAGAAAATCCCTATAAAATCTGTGCTCTCCAGGCGCTCCAGGAGTCGCGAAGCTGGTTTCCGGCCGCATCATTTTCGCTCTGAGGTGTGTCGTCACAGTCCTCGTCATGTGAGGAGAAGCGCACGTGCGCGCGTGTCCGAAGAGAAGCCGCTGGTCGAGAGCGAGCCTGACTCGAGCGCATCCGTGAGGAAACGCAGAGTAAAGAAGAGAGTCCAGCCGGAGTTTTACCACACTGTGCAGCTCACACCAACACGAAAACCAAGCTCCGGGTCCGGTAACGCGTCTCTGCGCTGCTCTATGTCTTCATCCGCGGATTTCTCAGATGATGAAGAGTATAGTGTGAAATCTGGGTCGGTGTCGCCGGCACCAGGGGACACTTTACCGTGGAATTTACCCAGACATGAGCGCTCGAAGCGGAAGATCCAGGGAGGATCCGTGCTGGATCCAGCCGAGAGAGCGGTGCTCAGGATCGCCGATGAAAGAGACCGAGTCCAGAAGAAGACTTTCACCAAATGGATCAATCAGCACCtcttaaagGTCCGAAAGCATGTGAATGACCTGTATGAGGATTTGCGGGATGGACATAACCTGATCTCCCTTCTGGAGGTGTTGTCCGGTGAGACTCTGCCGCGGGAGAAGGGCCGCATGCGCTTCCACAGACTCCAGAATGTACAGATCGCACTCGACTACTTAAAAAGACGCCAGGTCAAACTGGTGAACATCAGGAACGACGACATAACAGATGGAAACCCAAAGCTGACACTGGGATTAATATGGACCATAATTCTGCACTTTCAG
>TCONS_00011305
ATGTCGGAGCAGCCTTTAATAGAGATGTACACTGCGAGCTCCGGGTCCGGTAACGCGTCTCTGCGCTGCTCTATGTCTTCATCCGCGGATTTCTCAGATGATGAAGAGTATAGTGTGAAATCTGGGTCGGTGTCGCCGGCACCAGGGGACACTTTACCGTGGAATTTACCCAGACATGAGCGCTCGAAGCGGAAGATCCAGGGAGGATCCGTGCTGGATCCAGCCGAGAGAGCGGTGCTCAGGATCGCCGATGAAAGAGACCGAGTCCAGAAGAAGACTTTCACCAAATGGATCAATCAGCACCtcttaaagGTCCGAAAGCATGTGAATGACCTGTATGAGGATTTGCGGGATGGACATAACCTGATCTCCCTTCTGGAGGTGTTGTCCGGTGAGACTCTGCCGCGGGAGAAGGGCCGCATGCGCTTCCACAGACTCCAGAATGTACAGATCGCACTCGACTACTTAAAAAGACGCCAGGTCAAACTGGTGAACATCAGGAACGACGACATAACAGATGGAAACCCAAAGCTGACACTGGGATTAATATGGACCATAATTCTGCACTTTCAGatCTCAGAAATTCACGTGACAGGCGAATCCGAGGACATGACGGCCAAGGAGAGGCTTCTGCTGTGGTCCAAGCAGATGACTGAAGGATACGTCGGGGTCCGCTGCGACAACTTCACTACCTCCTGGAGAGACGGACGCCTCTTTAACGCCATCATCCATAAGTACAGGCCTGATCTGGTGGACATGAGCAGAGTCTCGGCACAAACCAGCAGATCTAACCTGGAGCAGGCGTTCGGTGTGGCGGAGCAGCTCGGTGTGGCTCGACTGCTGGATCCAGAGGATGTCGACGTGTCTTCACCGGATGAGAAATCTGTCATTACATATGTTTCCACATTATATGACGTCTTCCCAAAAGTACCAGAAGGTGGAGATGGCATCAATGCAAATGATGTGGATGTGAAATGGGTGGAGTACCAGAACATGGTAAATTACCTCAGTCAGTGGATCAAACACAACGTGACTGTGATGTCAGACAGACATTTTCCCAGCAGTCCTGTGGAGCTCAAGGCACTTTATACTCAGTATCTACACTTTAAAGAGAACGAAATACCACCAAAAGAGAACGAAAAGTCCAAAATCAAGCATCTCTACAAAATGCTGGAGATATGGATAGAGTTCGGGCGCGTGCAGCTGCCTCCGGGCTTTCATCCCAATGATGTGGAGAAAGAGTGGGGAAAGCTGATCGTGGCCATGCTGGAGCGAGAGAAGAGCCTGAGGCCGGAGGTGGACAGACTGGAGATGCTCCAGCAAATTGCAAACCGTGTTCAGCGGGACTGCGCAGCCGGAGAGGATAAACTAGCGCTAGCACGCACCTCTCTGCAGTCGGATGTGAAGCGTCTGGAATCAGGAATCCAGTTCCAGAATGAAGCAGAAATCGCTGGTTTTCTCCTGGAGTGTGAGACTTTACTGAGGCAGCAGGTGGTGGATATTCAGCAGCTGCTGGATGGGAAATTCTACCTAGCCGATCAGCTTGTACAGAGggtGTCGAAGCTGCGTGACGACCTGCTGTCTCTGAGGAGCGAGTGTTCCTCCGTCTACAGTAAAGGACGGACTCTGACCTCAGAACAGACCAAGATGATGATCTCGGGGATCACGCAGAGCCTGAACTCGGGCTTCAGTGCGGGTCTGCTTTCGTCGGCCGGTGCTCCAGTGATTAGCAATCCCAGCATGCATCAGCAGTCGGTGGTGGGAACGGTTTCAGCATTCTCGAATCCCGGAGCTGGAGGAGTCCTGGAgcacctcaaacacacacacatccgcAAACCCATGCTCAAATCCTCGTTCCTGGACCCCAACCTGAGCGAGGACGAGGCTAATATGAAGTTTGTGCAGGATCTGCTCAGCTGGGTGGAGGAGATGCAGGTTCAGCTGGATCAGGCTGAATGGGGATCTGATTTGCTGAGTGTTGAGTCCAATTTAGGGAAACATAAAGATTTCCACAAAGCCATCGAAGAGTTCCAGATGAGC

Function

symbol description
si:ch211-165e15.1 Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of filamentous actin. Predicted to be active in microtubule organizing center.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102406

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011304 False 930 mRNA 0.53 8 1430094 1496987
TCONS_00011305 True 2040 mRNA 0.52 16 1439152 1534879

Neighbor

gene id symbol gene type direction distance location
XLOC_005695 rab23 coding upstream 35092 1381953 ~ 1395002 (+)
XLOC_005694 ifngr1l coding upstream 55167 1357552 ~ 1374927 (+)
XLOC_005693 tnfaip3 coding upstream 221164 1182257 ~ 1208930 (+)
XLOC_005692 perp coding upstream 259399 1155536 ~ 1170695 (+)
XLOC_005691 wdr92 coding upstream 288923 1131748 ~ 1141171 (+)
XLOC_005697 CABZ01044277.1 coding downstream 632 1535511 ~ 1543927 (+)
XLOC_005698 CABZ01044281.1 coding downstream 7614 1542493 ~ 1552927 (+)
XLOC_005699 DST coding downstream 40397 1575276 ~ 1719930 (+)
XLOC_005700 zmp:0000000760 coding downstream 192074 1726953 ~ 1786145 (+)
XLOC_005701 CABZ01044297.1 coding downstream 230628 1765507 ~ 1765622 (+)
XLOC_005687 NA non-coding upstream 443831 973009 ~ 986263 (+)
XLOC_005685 NA non-coding upstream 568198 859057 ~ 861896 (+)
XLOC_005671 NA non-coding upstream 725756 471548 ~ 704338 (+)
XLOC_005675 NA non-coding upstream 869109 553591 ~ 560985 (+)
XLOC_005670 CABZ01061569.1 non-coding upstream 991632 438347 ~ 438462 (+)
XLOC_005705 NA non-coding downstream 448432 1983311 ~ 2033043 (+)
XLOC_005706 NA non-coding downstream 614891 2149770 ~ 2153016 (+)
XLOC_005708 CR376766.2 non-coding downstream 817410 2352289 ~ 2352995 (+)
XLOC_005710 CR376766.1 non-coding downstream 851534 2386413 ~ 2386533 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_05227162_05227711 NA coding CI01000005 null 5227091 ~ 5227778 (+)
bowfin (Amia calva) AMCG00001739 dst coding CM030143.1 CM030143.1 14079768 ~ 14203773 (+)