XLOC_005694 (ifngr1l)


Basic Information

Item Value
gene id XLOC_005694
gene name ifngr1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1357552 ~ 1374927 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011301
agagaagaaaaggcgaagggagcacaaacacacacgcttCAGATTCAGGAAATGCGGCTCTGCTCGTGGACACACGTCTGAAATCGGCCTGAAAAGTTCTGGAAAACCCGTTCATCAAAATGTCTGGAGATCCTGGTTTGGGGATCCAGTTGGGACTATTTTACGCCATTCTCTGCCAGTGTGTCTTCGGTGTTGTTCCTCCTCCAGCAAACCTCAGTGTTGTCTGTCACAACTTCAAGAACGTCCTTTACTGGAACTACAGCAGTGCAGTCCAGCAGCCCACGTTCACTGTAAACCTCATTCCCTATGAAAGTAAACCTCAGACGGTGAAAACCTCTCAGACGCACCTGGATATCAGCAGCTACAGCAGTGAAGCCATTGATCATTATGTGGTGTCGGTGACGGCAGATGTTGGACAGGAGATTTCTGAAAGCCTCTCTGTTGAATTCACTTACAGCACAGATTTTTACAATGAGAAAACCCACAAGTGCACTCTGGATTTTCCAGCTGTGGATGCGTCTGTGCACAAAGATGTGATCGAGGTTTCCTTCAAGCATCCTTCAGCATTTTATGAGCGGGCCAGCCTGGAGGAGGAATTCGAATACACCATCATCCTTAACCCATCCTCATCCTCTGTTCCTCATCTCCAGGAAAAGTCCTCGCACTCATGCTTTGAGGATGAGCTTGGGTATTTGTGCGAAACAAAAGTCCACGTGAACCAGTCTGTGGTCGTTCAGTGGGTGGTGCTGAAGTTTGAGGGGAAAATCGCATCTATACCTGTACACACCTATAAAAATGTGTCTGTGCCTCAGCTGGAGCCTGCCTCAGccAAAACAGAATGGATTGCAGCTATTCTCTGTGGATCAATCGCATTGCTCTTCATTGTTTTCGTCGTTCTGTGGTTCATCCACAAAAATTTCTCCAAAATACCCAAAGTTCCCTCCATCCTGCGTAACATTGTGACGAGACCCTATTCAACACCTTATTCCCAACCCGAGTCTCCCCATGTCTCTTCAATGACTTCTGCAACACACACACCAGTACTGCTCTACAACAATGAGCCCCTCTTAGATTTTGTGCATGATGAAGTTTCCAAAACCACTGATACCCTTGTGAACACAGAAGAGGAGGAACCTGCGCCTTCTGAAGAGGAATATGACAGCTCCGGGGGCTTCGGCAAGTCCTCAGACTACGACAGTCCTAAATGCCTGCTGGAGATGAGCCCCGGAGATTTTCCGGAGGGATACGGCCCTCGACCGCCAATACTGCAGGCCTGACCCTACATTTACACCCTTTTCAGAAATTAATCAAAATCATTCATGCATTAGACTCTGTGTTCCACTGGGGATGTTGTGTGGGATTCAGAAAGCCTTGTTTTTAGCACCACCGATGGCCTTTTGGTGAACTTCGTTTAGTAATAATACAActtcaaatcagaaaaagttgtgaCCCAACttcatttgtcccatttttgcaaacaagtcttaatgtGGGCAA
>TCONS_00011302
GAATTCACTTACAGCACAGATTTTTACAATGAGAAAACCCACAAGTGCACTCTGGATTTTCCAGCTGTGGATGCGTCTGTGCACAAAGATGTGATCGAGGTTTCCTTCAAGCATCCTTCAGCATTTTATGAGCGGGCCAGCCTGGAGGAGGAATTCGAATACACCATCATCCTTAACCCATCCTCATCCTCTGTTCCTCATCTCCAGGAAAAGTCCTCGCACTCATGCTTTGAGGATGAGCTTGGGTATTTGTGCGAAACAAAAGTCCACGTGAACCAGTCTGTGGTCGTTCAGTGGGTGGTGCTGAAGTTTGAGGGGAAAATCGCATCTATACCTGTACACACCTATAAAAATGTGTCTGTGCCTCAGCTGGAGCCTGCCTCAGccAAAACAGAATGGATTGCAGCTATTCTCTGTGGATCAATCGCATTGCTCTTCATTGTTTTCGTCGTTCTGTGGTTCATCCACAAAAATTTCTCCAAAATACCCAAAGTTCCCTCCATCCTGCGTAACATTG

Function

symbol description
ifngr1l Predicted to enable cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; cardiovascular system; gill; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in asthma; hepatitis B; immunodeficiency 27A; immunodeficiency 27B; and tuberculosis. Orthologous to human IFNGR1 (interferon gamma receptor 1).

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071120-8 Predicted to enable cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; cardiovascular system; gill; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in asthma; hepatitis B; immunodeficiency 27A; immunodeficiency 27B; and tuberculosis. Orthologous to human IFNGR1 (interferon gamma receptor 1).

Ensembl:

ensembl_id ENSDARG00000074488

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011301 False 1497 mRNA 0.47 6 1357552 1374927
TCONS_00011302 True 517 mRNA 0.46 4 1369003 1374390

Neighbor

gene id symbol gene type direction distance location
XLOC_005693 tnfaip3 coding upstream 148622 1182257 ~ 1208930 (+)
XLOC_005692 perp coding upstream 186857 1155536 ~ 1170695 (+)
XLOC_005691 wdr92 coding upstream 216381 1131748 ~ 1141171 (+)
XLOC_005690 ppp3r1a coding upstream 236779 1100197 ~ 1120773 (+)
XLOC_005689 cnrip1b coding upstream 260535 1089942 ~ 1097017 (+)
XLOC_005695 rab23 coding downstream 7026 1381953 ~ 1395002 (+)
XLOC_005696 si:ch211-165e15.1 coding downstream 55167 1430094 ~ 1534879 (+)
XLOC_005697 CABZ01044277.1 coding downstream 160584 1535511 ~ 1543927 (+)
XLOC_005698 CABZ01044281.1 coding downstream 167566 1542493 ~ 1552927 (+)
XLOC_005699 DST coding downstream 200349 1575276 ~ 1719930 (+)
XLOC_005687 NA non-coding upstream 371289 973009 ~ 986263 (+)
XLOC_005685 NA non-coding upstream 495656 859057 ~ 861896 (+)
XLOC_005671 NA non-coding upstream 653214 471548 ~ 704338 (+)
XLOC_005675 NA non-coding upstream 796567 553591 ~ 560985 (+)
XLOC_005670 CABZ01061569.1 non-coding upstream 919090 438347 ~ 438462 (+)
XLOC_005701 CABZ01044297.1 non-coding downstream 390580 1765507 ~ 1765622 (+)
XLOC_005705 NA non-coding downstream 608384 1983311 ~ 2033043 (+)
XLOC_005706 NA non-coding downstream 774843 2149770 ~ 2153016 (+)
XLOC_005708 CR376766.2 non-coding downstream 977362 2352289 ~ 2352995 (+)
XLOC_005710 CR376766.1 non-coding downstream 1011486 2386413 ~ 2386533 (+)

Expression


Co-expression Network