XLOC_005690 (ppp3r1a)


Basic Information

Item Value
gene id XLOC_005690
gene name ppp3r1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1100197 ~ 1120773 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011294
ACGGAAACGGACGGAAAACAGGTTACCGACAAAAAAACAGCGCTTTTCTGCACAAAACCACAAGACCGAGAGCAGGATTCTCCTTCTACATCTGTGCTGTCATTTATTGCTGTTCATTTCCGAGGGGGAATTCCGTCGCACAGGCAGCAAAATGGGAAATGAGGCAAGTTATCCCCTGGAAATGTGCTCGCATTTCGATGCTGATGAGATTAAACGGCTGGGAAAGAGGTTTAAGAAACTCGACCTGGATAATTCAGGATCTCTGAGCGTGGAGGAGTTCATGTCCTTGCCCGAGTTGCAGCAGAATCCGCTGGTGCAGAGAGTCATCGACATATTCGACACCGACGGGAACGGAGAGGTGGATTTCAAAGagttcATCGAAGGCGTCTCTCAGTTCAGTGTGAAGGGAGATAAAGAGATGAAACTGCGCTTCGCCTTTAGGATCTACGACATGGACAAAGACGGCTATATTTCCAACGGCGAGCTGTTCCAGGTGCTGAAGATGATGGTGGGCAACAACCTGAAGGACAcgcaactgcagcagatcgtggATAAAACCATCATCAACGCAGACAAAGACGGAGACGGGAGAATATCCTTCGAGGAGTTCTGCGCCGTTGTTGGAGGTCTGGATATACACAAGAAGATGGTTGTGGACGTGTGATGGAGCTGCTCTCCATCTGATCCGCTTTCCTCTCTGGATATCCAGCAAATGCTCTCTGTGTGTTTCAATGGAAGTATTTAAGCCACTTTTGTCAACTAGaagccagtgtgtgtgtgcgcgagtgtgtgtgcgtgagtatgtgtgtgtgtgtgtgttattgagcTGCTCAATAACCTGCTGGCGGACACTGAACGAGCATCTCAGCTGAGGAGGAAaccatatttatttagttttattttttaatgcttttgtttgtttgtttttttacaattaatttaatcttttgaagaagaagaagaagaaaaaatattaagtaTGATAtctataagtatatatatatataaggtatgACGTGTGCCAAGCAGAACATacagaacaaacacacaaacaaaaagctTCTCTTCAACTGCATGACGAAACCGAGCGTCTGTCTGTTTGACTTTGTGATATACACTATTTCTATTATTCTAGCATCTAACCATGTTTAATACCTGTTCTTTTGTATTAATGGTGATcatgtataaatgtttatattgaaA

Function

symbol description
ppp3r1a Predicted to enable calcium ion binding activity and calcium-dependent protein serine/threonine phosphatase regulator activity. Is expressed in brain. Human ortholog(s) of this gene implicated in Alzheimer's disease and dilated cardiomyopathy. Orthologous to human PPP3R1 (protein phosphatase 3 regulatory subunit B, alpha).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081113-3 Predicted to enable calcium ion binding activity and calcium-dependent protein serine/threonine phosphatase regulator activity. Is expressed in brain. Human ortholog(s) of this gene implicated in Alzheimer's disease and dilated cardiomyopathy. Orthologous to human PPP3R1 (protein phosphatase 3 regulatory subunit B, alpha).

Ensembl:

ensembl_id ENSDARG00000092659

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011294 True 1203 mRNA 0.43 6 1100197 1120773

Neighbor

gene id symbol gene type direction distance location
XLOC_005689 cnrip1b coding upstream 3180 1089942 ~ 1097017 (+)
XLOC_005688 prokr1b coding upstream 74973 1015749 ~ 1025224 (+)
XLOC_005687 NA coding upstream 113934 973009 ~ 986263 (+)
XLOC_005686 pcsk2 coding upstream 122545 912123 ~ 977652 (+)
XLOC_005685 NA coding upstream 238301 859057 ~ 861896 (+)
XLOC_005691 wdr92 coding downstream 10975 1131748 ~ 1141171 (+)
XLOC_005692 perp coding downstream 34763 1155536 ~ 1170695 (+)
XLOC_005693 tnfaip3 coding downstream 61484 1182257 ~ 1208930 (+)
XLOC_005694 ifngr1l coding downstream 236779 1357552 ~ 1374927 (+)
XLOC_005695 rab23 coding downstream 261180 1381953 ~ 1395002 (+)
XLOC_005671 NA non-coding upstream 395859 471548 ~ 704338 (+)
XLOC_005675 NA non-coding upstream 539212 553591 ~ 560985 (+)
XLOC_005670 CABZ01061569.1 non-coding upstream 661735 438347 ~ 438462 (+)
XLOC_005701 CABZ01044297.1 non-coding downstream 644734 1765507 ~ 1765622 (+)
XLOC_005705 NA non-coding downstream 862538 1983311 ~ 2033043 (+)
XLOC_005706 NA non-coding downstream 1028997 2149770 ~ 2153016 (+)
XLOC_005708 CR376766.2 non-coding downstream 1231516 2352289 ~ 2352995 (+)
XLOC_005710 CR376766.1 non-coding downstream 1265640 2386413 ~ 2386533 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_06006736_06010521 PPP3R1.S, CANB1, PPP3R1, PPP3R1A, PPP3R1B coding CI01000005 null 6005366 ~ 6010535 (-)