XLOC_005705


Basic Information

Item Value
gene id XLOC_005705
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1983311 ~ 2033043 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013535
ATTATCACCAACTGGAAAAAATATTAGAGTAATttttagtaaatactatagtgttttttgaGCCATACTTTTGCCGTGTATTAAAGCCTAATGTGTATAGTTTacaaaagttcagatgcaaaaacatctAGATGCTGTCTGAAATGTTCTCTGAAAATTTGTGAATTCATAAATGCATCACATTAAtggcaaaataatttattttcatggtctttaaagtgatataactcaacataaacatagAAGGAAGAGAAAAAAACTCATTATCAATACatatttcagatggcacttagaggtttttgcatcttagggagtccaaactcggtcctggagggccggtgtcctgcaaagtttagttccaaccccaatcagacactccTGGGCGACCTAATCAAGGCTTTGGAAACatcctgcaggtgtgttgaggcaagttggagctaaaatctgcaggacacaggccctccctgagtttggacacccctttcaaatctttgttaataaataattcaaatatttaattGATACGGTAGTATACGTGTTTGCACTTTTGTATACCATACTATAACTTAGTCCAGTATAAACAATGTGTTTTACTACTAGTTGTATTACCATTGAAACTACAGAattaccacagcagattaattcaagtactttacaaTAGATTTGGCTCAAATTTCAATAGTATTTGCTACTAAtctcggtaacactttagtttaagtatcaattcacaccatttacacAATacttaaacccaactactaccttgcTAACTATAAATAAGCAGCTAATCcatagtttattgagctaaaagtcttagttattAGCGTGAATTGTACATTACAATAAAGCGTGACCGTAAGGTACATCAGGTGGGCAGTTAGCTCGCAGCGCCATCTGttggtgaaaacagttactgCCTTTTTGCTCTGTAAGCCAGCAGTTGTTTTGCACTGTATTAACGGGATGTTTGTAAAACGGGAATATTTCTGGTGACAGGACACCAAAAACTGACAGTCTCATCAGATAAATGTGACATCTGTGTACCGTGAGCTTAAATAATCATCAATGTTTTACTGACGGATATCCGAGTGGCCTGAAGGTGAGTGTTAAACCGGCCTGTGTTTGAGCAGGTAACAGATATTCAGCTCTTTTCACTCTCGGTGAAAGCAAACAGATGGACTCAAGCCTTTATTACAGCCTGACCTGACCCCGGCGATTCATCAACAAAGAGCAGGCATATGCTGAAGTATGAAAGCTGTTTTATTATTCAAAACCAGGTGCAGCAGCTGCTCAATATCTCTCACCTGCACTGCAGCCTCAGCCAATCAGCAGCAGATCACACTGTCAAAGCAGCCCTCAGCTGACTTTActcaaaaaatgtgtgattgagtgtccGGGCGCTCACCTCTTCATGATGTTGAGGATGCTGATGGGCAGGTAGCAGAGGGCGAACACAAACAGCACCACCATCAGCATCCGTGCAGTTTTCCGCCGGGCTTTCACCTGCTTGGCCTCCGCTGACACTGTGCTGGTTCTCACCTTCACCGATTCTCCAGACCCGACCGCATGAGCCGAACACTGCAGAGACTTCCACTGCCTCTGGAGGACCGAAGACGACCCTGGAATCTGATTACAGGTCAA
>TCONS_00013536
ATTATCACCAACTGGAAAAAATATTAGAGTAATttttagtaaatactatagtgttttttgaGCCATACTTTTGCCGTGTATTAAAGCCTAATGTGTATAGTTTacaaaagttcagatgcaaaaacatctAGATGCTGTCTGAAATGTTCTCTGAAAATTTGTGAATTCATAAATGCATCACATTAAtggcaaaataatttattttcatggtctttaaagtgatataactcaacataaacatagAAGGAAGAGAAAAAAACTCATTATCAATACatatttcagatggcacttagaggtttttgcatcttagggagtccaaactcggtcctggagggccggtgtcctgcaaagtttagttccaaccccaatcagacactccTGGGCGACCTAATCAAGGCTTTGGAAACatcctgcaggtgtgttgaggcaagttggagctaaaatctgcaggacacaggccctccctgagtttggacacccctttcaaatctttgttaataaataattcaaatatttaattGATACGGTAGTATACGTGTTTGCACTTTTGTATACCATACTATAACTTAGTCCAGTATAAACAATGTGTTTTACTACTAGTTGTATTACCATTGAAACTACAGAattaccacagcagattaattcaagtactttacaaTAGATTTGGCTCAAATTTCAATAGTATTTGCTACTAAtctcggtaacactttagtttaagtatcaattcacaccatttacacAATacttaaacccaactactaccttgcTAACTATAAATAAGCAGCTAATCcatagtttattgagctaaaagtcttagttattAGCGTGAATTGTACATTACAATAAAGCGTGACCGTAAGGTACATCAGGTGGGCAGTTAGCTCGCAGCGCCATCTGttggtgaaaacagttactgCCTTTTTGCTCTGTAAGCCAGCAGTTGTTTTGCACTGTATTAACGGGATGTTTGTAAAACGGGAATATTTCTGGTGACAGGACACCAAAAACTGACAGTCTCATCAGATAAATGTGACATCTGTGTACCGTGAGCTTAAATAATCATCAATGTTTTACTGACGGATATCCGAGTGGCCTGAAGGTGAGTGTTAAACCGGCCTGTGTTTGAGCAGGTAACAGATATTCAGCTCTTTTCACTCTCGGTGAAAGCAAACAGATGGACTCAAGCCTTTATTACAGCCTGACCTGACCCCGGCGATTCATCAACAAAGAGCAGGTGCAGCAGCTGCTCAATATCTCTCACCTGCACTGCAGCCTCAGCCAATCAGCAGCAGATCACACTGTCAAAGCAGCCCTCAGCTGACTTTActcaaaaaatgtgtgattgagtgtccGGGCGCTCACCTCTTCATGATGTTGAGGATGCTGATGGGCAGGTAGCAGAGGGCGAACACAAACAGCACCACCATCAGCATCCGTGCAGTTTTCCGCCGGGCTTTCACCTGCTTGGCCTCCGCTGACACTGTGCTGGTTCTCACCTTCACCGATTCTCCAGACCCGACCGCATGAGCCGAACACTGCAGAGACTTCCACTGCCTCTGGAGGACCGAAGACGACCCTGGAATCTGATTACAGttCAGAGATTATTGACGggaaagtatggggagcagagagaggggaagaatcggcataggaccgcgaggcgggattcgaactcgggtcgccgtgagcaccagagtgcatgtgtcaatgcactaaccactacagcACTGGCGCCGACTTGTTTTGAGTGAAatgaaagtgagtaaatgatgcttTCCCAGAGTTTCATCTAAAATTGTTGCATAAAGCATCTTATATAAGCTTAATTTAATCCCATAGCATAATACAGATATACATAATCAGCAGTAAAACCAATCATGTGAAAATGAAAGCCGAA
>TCONS_00013537
GCTGTTTTATTATTCAAAACCAGTTTTCAGTTCTAACCTGCACGAAGCATCCTCAAAGCAGCTGTCCAGCGCTTCCAAACAGGTCCAGGGTGTCTGCGTCTGCTCGCTCACACAGGATCCGTAGTGGATAAGAGCCTTCATCTCCTGGCATTGCTGGTCTTGTGCACCACATTCACAGAACACCAGTGTTTCAGCCACACTGTGAGGAAGAGCCGAGTAGAACTGCCGTATCGCCTCTGTGCACTGATTACATGAGGAAGCCTTGCACTCCTGGAGAAGCGGCACCATGGGCCTGTTACAGCTCTC
>TCONS_00011315
TGCAGCAGCTGCTCAATATCTCTCACCTGCACTGCAGCCTCAGCCAATCAGCAGCAGATCACACTGTCAAAGCAGCCCTCAGCTGACTTTActcaaaaaatgtgtgattgagtgtccGGGCGCTCACCTCTTCATGATGTTGAGGATGCTGATGGGCAGGTAGCAGAGGGCGAACACAAACAGCACCACCATCAGCATCCGTGCAGTTTTCCGCCGGGCTTTCACCTGCTTGGCCTCCGCTGACACTGTGCTGGTTCTCACCTTCACCGATTCTCCAGACCCGACCGCATGAGCCGAACACTGCAGAGACTTCCACTGCCTCTGGAGGACCGAAGACGACCCTGGAATCTGATTACAGGTCAA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000099687

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013535 False 1641 lncRNA 0.41 5 1983311 2029457
TCONS_00013536 False 1897 lncRNA 0.42 5 1983311 2033043
TCONS_00013537 False 306 lncRNA 0.52 2 1986346 1999261
TCONS_00011315 True 363 lncRNA 0.55 2 2010287 2029457

Neighbor

gene id symbol gene type direction distance location
XLOC_005704 hmgcll1 coding upstream 1584 1928361 ~ 1981727 (+)
XLOC_005703 bmp5 coding upstream 76579 1872767 ~ 1906732 (+)
XLOC_005702 col21a1 coding upstream 116600 1799003 ~ 1866711 (+)
XLOC_005700 zmp:0000000760 coding upstream 197166 1726953 ~ 1786145 (+)
XLOC_005701 CABZ01044297.1 coding upstream 217689 1765507 ~ 1765622 (+)
XLOC_005706 NA coding downstream 116727 2149770 ~ 2153016 (+)
XLOC_005707 klhl31 coding downstream 305718 2338761 ~ 2350762 (+)
XLOC_005708 CR376766.2 coding downstream 319246 2352289 ~ 2352995 (+)
XLOC_005709 gclc coding downstream 324594 2357637 ~ 2392664 (+)
XLOC_005710 CR376766.1 coding downstream 353370 2386413 ~ 2386533 (+)
XLOC_005687 NA non-coding upstream 997048 973009 ~ 986263 (+)
XLOC_005685 NA non-coding upstream 1121415 859057 ~ 861896 (+)
XLOC_005671 NA non-coding upstream 1278973 471548 ~ 704338 (+)
XLOC_005715 NA non-coding downstream 638389 2671432 ~ 2676336 (+)
XLOC_005718 BX571701.4 non-coding downstream 800049 2833092 ~ 2833207 (+)
XLOC_005675 NA non-coding upstream 1422326 553591 ~ 560985 (+)

Expression


Co-expression Network