XLOC_005704 (hmgcll1)


Basic Information

Item Value
gene id XLOC_005704
gene name hmgcll1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1928361 ~ 1981727 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011313
GGCAGGTCGCGCTGGCCGGATGGGGAACGTTTCCTCCGCGGTCAAACACTGCCTGAGCTACGAGACTTTCCTGCGGGATTATCCGTGGTTGCCGCGGCTCCTGTGGGAAGAGAAGTGTTCAGAGCTGCCCAAACTTCCAGTCTACGTCAAAATCGTGGAGGTCGGACCAAGAGATGGACTCCAAAATGAGAAGGAAATCGTGCCGACAGAGGTCAAAATCCAGCTGATAGACCTGCTTTCTCAGACTGGCCTGCCTGTGATCGAGGCCACGAGTTTCGTGTCTTCAAAGTGGGTTGCACAGatggccGACCACACCGCAGTGCTGAAAGGGATTAAAAGGTCTCCTGACGTTAGATACCCGGTTCTGACTCCCAATATTCAGGGCTTCCAGGCAGCCGTTGCAGCGGGAGCCAATGAAGTGGCAGTGTTTGGTTCTGCATCAGAGACGTTCAGCAGGAAAAACATCAACTGCTCCATAGAGGAGAGCTTGCAGAGGTTCGAGCAGGTCGTTTCTGCAGCCAAACAGGAAGGCATACCAGTGCGCGGGTATGTTTCCTGCGCTCTCGGCTGTCCCTATGAAGGACAAGTAAAACCCTCACAAGTCACGAAGGTGGCGAAGCGCTTGTTTGAGCTGGGCTGTTATGAGGTTTCCCTGGGGGACACCATTGGCGTGGGCACTGCGGGCTCCATGGCTGAGATGCTGAGCGATGTGTTGACAGAAGTGCCCGCTGGTGCATTGGCGGTGCACTGCCATGACACTTACGGTCAGGCGCTGCCCAACATACTCATAGCTCTGCAGATGGGGGTTTCTGTGGTCGACGCCTCGGTCGCGGGTCTCGGCGGATGCCCGTTTGCCAAAGGAGCATCAGGCAATGTTTCTACTGAGGATCTTCTGTATATGCTGCACGGACTTGGGATCGAAACTGGAGTGGATCTGCTTAAAGTCATGGAGGCTGGAGATTTCATCTGTAAAGCCTTAAACAGAAAGACCAACTCCAAGGTCAGCCAAGCGACCAGAAACAACTAGAGTTTACATTACAAGAGACAataaatgcagtgtgttttgtcAAAATAACAAGTTCAGCGCAGCATCAAAATAATCACAGTATAtgatatgtgtgtatgtgtgtgtgcgtgagtgagtGTTATCATAATAGTTTTCTTAATAAATTcatcataaatgt
>TCONS_00011314
cagatggccGACCACACCGCAGTGCTGAAAGGGATTAAAAGGTCTCCTGACGTTAGATACCCGGTTCTGACTCCCAATATTCAGGGCTTCCAGGCAGCCGTTGCAGCGGGAGCCAATGAAGTGGCAGTGTTTGGTTCTGCATCAGAGACGTTCAGCAGGAAAAACATCAACTGCTCCATAGAGGAGAGCTTGCAGAGGTTCGAGCAGGTCGTTTCTGCAGCCAAACAGGAAGGCATACCAGTGCGCGGGTATGTTTCCTGCGCTCTCGGCTGTCCCTATGAAGGACAAGTAAAACCCTCACAAGTCACGAAGGTGGCGAAGCGCTTGTTTGAGCTGGGCTGTTATGAGGTTTCCCTGGGGGACACCATTGGCGTGGGCACTGCGGGCTCCATGGCTGAGATGCTGAGCGATGTGTTGACAGAAGTGCCCGCTGGTGCATTGGCGGTGCACTGCCATGACACTTACGGTCAGGCGCTGCCCAACATACTCATAGCTCTGCAGATGGGGGTTTCTGTGGTCGACGCCTCGGTCGCGGGTCTCGGCGGATGCCCGTTTGCCAAAGGAGCATCAGGCAATGTTTCTACTGAGGATCTTCTGTATATGCTGCACGGACTTGGGATCGAAACTGGAGTGGATCTGCTTAAAGTCATGGAGGCTGGAGATTTCATCTGTAAAGCCTTAAACAGAAAGACCAACTCCAAGGTCAGCCAAGCGACCAGAAACAACTAGAGTTTACATTACAAGAGACAataaatgcagtgtgttttgtcAAAATAACAAGTTCAGCGCAGCATCAAAATAATCACAGTATAtgatatgtgtgtatgtgtgtgtgcgtgagtgagtGTTATCATAATAGTTTTCTTAATAAATTcatcataaatgta

Function

symbol description
hmgcll1 Predicted to enable hydroxymethylglutaryl-CoA lyase activity and metal ion binding activity. Predicted to be involved in ketone body biosynthetic process; leucine catabolic process; and lipid metabolic process. Predicted to be located in several cellular components, including cytosol; endoplasmic reticulum; and perinuclear region of cytoplasm. Orthologous to human HMGCLL1 (3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0046951 ketone body biosynthetic process biological_process
GO:0006552 leucine catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004419 hydroxymethylglutaryl-CoA lyase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-15 Predicted to enable hydroxymethylglutaryl-CoA lyase activity and metal ion binding activity. Predicted to be involved in ketone body biosynthetic process; leucine catabolic process; and lipid metabolic process. Predicted to be located in several cellular components, including cytosol; endoplasmic reticulum; and perinuclear region of cytoplasm. Orthologous to human HMGCLL1 (3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1).

Ensembl:

ensembl_id ENSDARG00000088740

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011313 False 1184 mRNA 0.51 9 1928361 1981726
TCONS_00011314 True 887 mRNA 0.50 6 1944451 1981727

Neighbor

gene id symbol gene type direction distance location
XLOC_005703 bmp5 coding upstream 21629 1872767 ~ 1906732 (+)
XLOC_005702 col21a1 coding upstream 61650 1799003 ~ 1866711 (+)
XLOC_005700 zmp:0000000760 coding upstream 142216 1726953 ~ 1786145 (+)
XLOC_005701 CABZ01044297.1 coding upstream 162739 1765507 ~ 1765622 (+)
XLOC_005699 DST coding upstream 208431 1575276 ~ 1719930 (+)
XLOC_005705 NA coding downstream 1584 1983311 ~ 2033043 (+)
XLOC_005706 NA coding downstream 168043 2149770 ~ 2153016 (+)
XLOC_005707 klhl31 coding downstream 357034 2338761 ~ 2350762 (+)
XLOC_005708 CR376766.2 coding downstream 370562 2352289 ~ 2352995 (+)
XLOC_005709 gclc coding downstream 375910 2357637 ~ 2392664 (+)
XLOC_005687 NA non-coding upstream 942098 973009 ~ 986263 (+)
XLOC_005685 NA non-coding upstream 1066465 859057 ~ 861896 (+)
XLOC_005671 NA non-coding upstream 1224023 471548 ~ 704338 (+)
XLOC_005710 CR376766.1 non-coding downstream 404686 2386413 ~ 2386533 (+)
XLOC_005715 NA non-coding downstream 689705 2671432 ~ 2676336 (+)

Expression


Co-expression Network