XLOC_005702 (col21a1)


Basic Information

Item Value
gene id XLOC_005702
gene name col21a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1799003 ~ 1866711 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011311
cgacaacaagCTTGGTACTTCAAGAACATGGGTTGCAAAATGAGATCCATGCATTTTGTGTTTTGGTGTCTTTACTTCATGCTCCTTCACTTGTTTTGCACAGCACAAGATGAGGACATGAGATTGAGTTGTAGGACAGCGCCAAGTGACTTAGTATTCATACTCGATGGATCATGGAGTGTGGATGATATAAACTTCGAGATTGTCAAAAAGTGGTTGGTGAATATCACCATGAGCTTCAATATCGGTCAAAAGTTCACCCAGGTTGGGGTGGTGCAATACAGCGACGACCCCTTCTTGCATATACCCCTGGGTAAACACTTCTCGAGCAGTGACCTCATCAAGGCCATGGAGTCTATAGAATACATGGGTGGGAACACCAACACTGGACGGGCCATCAAGTTCGCTAATGACAAACTCTTTGCCCTGTCTGAGCGAGGTCCGAATGGCATTGCGAAAATCGCTGTGGTTCTGACGGACGGGAAGTCACAAGATGAAGTGCTGGCAGCTGCGGAAGCTGCGAGGAAAAAGGGGATAATTCTCTTTGCAATTGGAGTCGGGTCTGAGACCGAAGAGGCACAGCTCAGGGCTATCGCCAACAAGCCATCCTCAACCTATGTTTTTTCTGTGAAAGACTATAAAGCGATCGCAAAGATCCGTGAAGTTATTAGGCAGAAGTTGTGCGAAGAGACTGTATGTCCAGCAAAGATTGCAATTAATTCTCGAGATGAGAAAGGCTTTGACATTCTCCTACATCTCAACTTGGCTAAAAAAGCCAAAAAGACACAAGGATCGTTTTATGGGAGTAAAGCCTACCAGGTGACATCCCGAGACGACCTGAGTGAGAGTACTAGGATGTTGTTTCCAGGTGGACTTCCTCCTTCCTATGTTTTTGTGGCTACCTTAAAGTACAAAGGCTCTGTGGCTATAGAGGAGTGGGACTTATGGCGGATACAGACTAAAGATGAAAAACCTCAAATGGCTGTTAGCCTCAATGGCCTGGACAGAACAGTGATGtttaccaccaccaccagcaaaACACCAAGCGGAACTCAAACTGTGGTCTTCACTAAATCACCAGCTAAGAAACTATTTGATGAAAAATGGCATCAGCTGCGTCTTTTAGTGACAGAGGAAGACGTCACCCTGTATGTTGATGACCTGGAAATTGAAACCTTGGCGCTGGAGCCTCCTGATGGTATTTTTATTAATGGGAAAACGCAGGTTGGGAAGTACGTCAGCAAAGAAACAACAGTACCTTTTGAAGTACAAAAACTCAGAATCTACTGCGACCCGGAGCAGAACAACAGAGAAACCGCCTGTGAAATACCTGGAGTTGTGAGTACCAGAATCTTGGATGTTTCTATTTTTGCCCTTTCAactaccctgctaaaaaatccaAATGTCCTCATCTGTGTGAGcagcacatatttaaatgtaccgCCCGGTaaagttatttcaaatatatactggtatcactgtgtgaaaggggctagtgtgtgtgtgtgtgttgagctgtGTTTGTGTGATTGTCAGAAAGGGACGGCAGGAGAGCCGGGTCAGAGCGGCCTAAACGGACACCAAGGGCTCCCAGGACAGCGTGGACAGACGGGACCCTCAGGACCCAGAGGACAGAGCGGAGAAATCGGCCACCCGGGGCCACCTGGACCTGAGGGACGACCGGTGTCGGAGATCCCAGCTCTTCTCTTGAGCTCTCAGCACAGTCAGCACCGGAGCTGTGAGCACTGCTACACGCGTGTGGGACCCCCGGGGCCTGTGGGGACACCTGGCCCGCATGGCCCCCGAGGATTCCCTGGACTTTCTGGATCCAACGGGCTGCAGGGTCAACGGGGTTTACCGGGACGGCCTGGGGTTCCTGGCATGAAAGGTGATCCAGGGGAAAAGGGTGATAAAGGGAGTCAAGGACGGTCAGTAATCGGAGACCCAGGTCTACCAGGACCACCAGGTCCGACAGGTCCAGCAGGGGTCGGAAAACCAGGTCAAGCAGGTAAACCAGGCTCACCTGGCCACGAAGGCAAGGAAGGCAAGCGAGGTCAAAGCGGAGAGCCAGGTCAGCCCGGCGTCTGCCATCCGGCCATGTGCTACGGCGCGATGATACGGAGGGATCCCTTCAGTAAAGGGCCAAACTATTGA

Function

symbol description
col21a1 Predicted to be part of collagen trimer. Orthologous to human COL21A1 (collagen type XXI alpha 1 chain).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-110607-3 Predicted to be part of collagen trimer. Orthologous to human COL21A1 (collagen type XXI alpha 1 chain).

Ensembl:

ensembl_id ENSDARG00000025320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011311 True 2154 mRNA 0.50 11 1799003 1866711

Neighbor

gene id symbol gene type direction distance location
XLOC_005700 zmp:0000000760 coding upstream 12858 1726953 ~ 1786145 (+)
XLOC_005701 CABZ01044297.1 coding upstream 33381 1765507 ~ 1765622 (+)
XLOC_005699 DST coding upstream 79073 1575276 ~ 1719930 (+)
XLOC_005698 CABZ01044281.1 coding upstream 246076 1542493 ~ 1552927 (+)
XLOC_005697 CABZ01044277.1 coding upstream 255076 1535511 ~ 1543927 (+)
XLOC_005703 bmp5 coding downstream 6056 1872767 ~ 1906732 (+)
XLOC_005704 hmgcll1 coding downstream 61650 1928361 ~ 1981727 (+)
XLOC_005705 NA coding downstream 116600 1983311 ~ 2033043 (+)
XLOC_005706 NA coding downstream 283059 2149770 ~ 2153016 (+)
XLOC_005707 klhl31 coding downstream 472050 2338761 ~ 2350762 (+)
XLOC_005687 NA non-coding upstream 812740 973009 ~ 986263 (+)
XLOC_005685 NA non-coding upstream 937107 859057 ~ 861896 (+)
XLOC_005671 NA non-coding upstream 1094665 471548 ~ 704338 (+)
XLOC_005675 NA non-coding upstream 1238018 553591 ~ 560985 (+)
XLOC_005708 CR376766.2 non-coding downstream 485578 2352289 ~ 2352995 (+)
XLOC_005710 CR376766.1 non-coding downstream 519702 2386413 ~ 2386533 (+)
XLOC_005715 NA non-coding downstream 804721 2671432 ~ 2676336 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_05462663_05469057 COL21A1 coding CI01000005 null 5462534 ~ 5469174 (+)