RNA id: TCONS_00013535


Basic Information

Item Value
RNA id TCONS_00013535
length 1641
lncRNA type read_through
GC content 0.41
exon number 5
gene id XLOC_005705
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1983311 ~ 2033043 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTATCACCAACTGGAAAAAATATTAGAGTAATttttagtaaatactatagtgttttttgaGCCATACTTTTGCCGTGTATTAAAGCCTAATGTGTATAGTTTacaaaagttcagatgcaaaaacatctAGATGCTGTCTGAAATGTTCTCTGAAAATTTGTGAATTCATAAATGCATCACATTAAtggcaaaataatttattttcatggtctttaaagtgatataactcaacataaacatagAAGGAAGAGAAAAAAACTCATTATCAATACatatttcagatggcacttagaggtttttgcatcttagggagtccaaactcggtcctggagggccggtgtcctgcaaagtttagttccaaccccaatcagacactccTGGGCGACCTAATCAAGGCTTTGGAAACatcctgcaggtgtgttgaggcaagttggagctaaaatctgcaggacacaggccctccctgagtttggacacccctttcaaatctttgttaataaataattcaaatatttaattGATACGGTAGTATACGTGTTTGCACTTTTGTATACCATACTATAACTTAGTCCAGTATAAACAATGTGTTTTACTACTAGTTGTATTACCATTGAAACTACAGAattaccacagcagattaattcaagtactttacaaTAGATTTGGCTCAAATTTCAATAGTATTTGCTACTAAtctcggtaacactttagtttaagtatcaattcacaccatttacacAATacttaaacccaactactaccttgcTAACTATAAATAAGCAGCTAATCcatagtttattgagctaaaagtcttagttattAGCGTGAATTGTACATTACAATAAAGCGTGACCGTAAGGTACATCAGGTGGGCAGTTAGCTCGCAGCGCCATCTGttggtgaaaacagttactgCCTTTTTGCTCTGTAAGCCAGCAGTTGTTTTGCACTGTATTAACGGGATGTTTGTAAAACGGGAATATTTCTGGTGACAGGACACCAAAAACTGACAGTCTCATCAGATAAATGTGACATCTGTGTACCGTGAGCTTAAATAATCATCAATGTTTTACTGACGGATATCCGAGTGGCCTGAAGGTGAGTGTTAAACCGGCCTGTGTTTGAGCAGGTAACAGATATTCAGCTCTTTTCACTCTCGGTGAAAGCAAACAGATGGACTCAAGCCTTTATTACAGCCTGACCTGACCCCGGCGATTCATCAACAAAGAGCAGGCATATGCTGAAGTATGAAAGCTGTTTTATTATTCAAAACCAGGTGCAGCAGCTGCTCAATATCTCTCACCTGCACTGCAGCCTCAGCCAATCAGCAGCAGATCACACTGTCAAAGCAGCCCTCAGCTGACTTTActcaaaaaatgtgtgattgagtgtccGGGCGCTCACCTCTTCATGATGTTGAGGATGCTGATGGGCAGGTAGCAGAGGGCGAACACAAACAGCACCACCATCAGCATCCGTGCAGTTTTCCGCCGGGCTTTCACCTGCTTGGCCTCCGCTGACACTGTGCTGGTTCTCACCTTCACCGATTCTCCAGACCCGACCGCATGAGCCGAACACTGCAGAGACTTCCACTGCCTCTGGAGGACCGAAGACGACCCTGGAATCTGATTACAGGTCAA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013534 lncRNA upstream 997048 973009 ~ 986263 (+) True XLOC_005687
TCONS_00013527 lncRNA upstream 1121415 859057 ~ 861896 (+) False XLOC_005685
TCONS_00013539 lncRNA downstream 120313 2149770 ~ 2153016 (+) False XLOC_005706
TCONS_00013538 lncRNA downstream 120313 2149770 ~ 2153016 (+) True XLOC_005706
TCONS_00011318 lncRNA downstream 322832 2352289 ~ 2352995 (+) True XLOC_005708
TCONS_00011324 lncRNA downstream 365165 2394622 ~ 2410905 (+) True XLOC_005711
TCONS_00013540 lncRNA downstream 641975 2671432 ~ 2676336 (+) True XLOC_005715
TCONS_00011314 mRNA upstream 1584 1944451 ~ 1981727 (+) True XLOC_005704
TCONS_00011313 mRNA upstream 1585 1928361 ~ 1981726 (+) False XLOC_005704
TCONS_00011312 mRNA upstream 76579 1872767 ~ 1906732 (+) True XLOC_005703
TCONS_00011311 mRNA upstream 116600 1799003 ~ 1866711 (+) True XLOC_005702
TCONS_00011309 mRNA upstream 197166 1726953 ~ 1786145 (+) True XLOC_005700
TCONS_00011316 mRNA downstream 309304 2338761 ~ 2350307 (+) False XLOC_005707
TCONS_00011317 mRNA downstream 309305 2338762 ~ 2350762 (+) True XLOC_005707
TCONS_00011319 mRNA downstream 328180 2357637 ~ 2392664 (+) True XLOC_005709
TCONS_00011321 mRNA downstream 364807 2394264 ~ 2410910 (+) False XLOC_005711
TCONS_00011322 mRNA downstream 365077 2394534 ~ 2411851 (+) False XLOC_005711
TCONS_00011310 other upstream 217689 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011289 other upstream 1133885 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011277 other upstream 1472172 502319 ~ 511139 (+) True XLOC_005673
TCONS_00011274 other upstream 1544849 438347 ~ 438462 (+) True XLOC_005670
TCONS_00011320 other downstream 356956 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011338 other downstream 803635 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011360 other downstream 1933310 3962767 ~ 3966255 (+) True XLOC_005731
TCONS_00011389 other downstream 3956319 5985776 ~ 6001981 (+) True XLOC_005757
TCONS_00011399 other downstream 4384827 6414284 ~ 6414400 (+) True XLOC_005764

Expression Profile

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