RNA id: TCONS_00011360


Basic Information

Item Value
RNA id TCONS_00011360
length 423
RNA type processed_transcript
GC content 0.44
exon number 2
gene id XLOC_005731
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 3954540 ~ 3966255 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGATCATTTACTGCTTATGAAATAGAGACTTGAGTTTATTCTAATGGCCGAGTCGTGAGTCCTGTATATCCTGAAGGCATTAGACATAGAGACTCTTCCAGCTCCCAGATGGTCCTGATGACTTCAGGACTGGGTGAGAGCTTTTTGGCAGAGACAGAGATGTGACACTGGAGCTGCCAGTGTGTTGAGCTTGCACCGTTCGACCGCTGCAAGACCGCCGCTTGTACCTGTAGCACTTAGCGCAAGACCGTTCAAAAGCTGGAACAGAAACCTTAAACACCAAGTGACTTATAATAACGCAAtagtgaattatttattttacagatgtaCAGTCTATTTATAAACGAGTGTTTAACCGATGACAGTGTATACTCTGTTAGATGAGCTGTATAGGGTTGTTGTGACGGCCTGATGCCTGAATA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-111118-2 Orthologous to human LRRC73 (leucine rich repeat containing 73).

Ensembl:

ensembl_id ENSDART00000164571

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011354 lncRNA upstream 54870 3895403 ~ 3907897 (+) True XLOC_005729
TCONS_00011353 lncRNA upstream 54873 3895363 ~ 3907894 (+) False XLOC_005729
TCONS_00011350 lncRNA upstream 119075 3832570 ~ 3843692 (+) True XLOC_005727
TCONS_00013543 lncRNA upstream 341939 3619266 ~ 3620828 (+) True XLOC_005726
TCONS_00011344 lncRNA upstream 701806 3259543 ~ 3260961 (+) True XLOC_005725
TCONS_00013544 lncRNA downstream 13672 3979927 ~ 3985680 (+) True XLOC_005732
TCONS_00013545 lncRNA downstream 167488 4133743 ~ 4134113 (+) True XLOC_005733
TCONS_00013546 lncRNA downstream 214976 4181231 ~ 4192036 (+) True XLOC_005734
TCONS_00011364 lncRNA downstream 366490 4332745 ~ 4335902 (+) True XLOC_005737
TCONS_00013377 lncRNA downstream 431896 4398151 ~ 4408956 (+) True XLOC_005739
TCONS_00011355 mRNA upstream 12094 3938526 ~ 3950673 (+) True XLOC_005730
TCONS_00011352 mRNA upstream 36588 3881211 ~ 3926179 (+) True XLOC_005728
TCONS_00011351 mRNA upstream 52848 3880882 ~ 3909919 (+) False XLOC_005728
TCONS_00011349 mRNA upstream 119279 3819475 ~ 3843488 (+) False XLOC_005727
TCONS_00011348 mRNA upstream 129936 3667233 ~ 3832831 (+) False XLOC_005727
TCONS_00011361 mRNA downstream 239469 4205724 ~ 4213909 (+) True XLOC_005735
TCONS_00011362 mRNA downstream 258918 4225173 ~ 4232686 (+) False XLOC_005736
TCONS_00011363 mRNA downstream 258918 4225173 ~ 4232690 (+) True XLOC_005736
TCONS_00011365 mRNA downstream 402249 4368504 ~ 4400816 (+) True XLOC_005738
TCONS_00011366 mRNA downstream 439027 4405282 ~ 4407074 (+) True XLOC_005740
TCONS_00011338 other upstream 1129560 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011320 other upstream 1576234 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011310 other upstream 2197145 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011289 other upstream 3113341 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011277 other upstream 3451628 502319 ~ 511139 (+) True XLOC_005673
TCONS_00011389 other downstream 2019521 5985776 ~ 6001981 (+) True XLOC_005757
TCONS_00011399 other downstream 2448029 6414284 ~ 6414400 (+) True XLOC_005764
TCONS_00011412 other downstream 3415263 7381518 ~ 7381633 (+) True XLOC_005774
TCONS_00011427 other downstream 4340412 8306667 ~ 8317874 (+) True XLOC_005783
TCONS_00011428 other downstream 4573012 8539267 ~ 8539381 (+) True XLOC_005784

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU133839 True 334 lncRNA 0.47 4 CM030133.1 25882692 ~ 25888838 (+)
tiger barb (Puntius tetrazona) TU133839 True 1656 lncRNA 0.44 2 NC_056711.1 3401964 ~ 3403754 (+)