XLOC_005732


Basic Information

Item Value
gene id XLOC_005732
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 3979927 ~ 3985680 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013544
CTAAGACTCTTAAATGAAGAGAACACAAAGCAAGACACATTTAAAAAGGCAACACAGAGTTTATTCgtctctaaaatatattcatcaAAAACAAAAGAATGAGGATGCTTTCAGTGGTTGCATCTGAAACTCATTTGAGAAAAGCTGATAAATGCTATCTGAACAAAGCTTGAAATAACAAAGATTttaagatgaacacaaagaaaacaaacagctGCTGGACAGACTAATCATCCACAATCAAGACAGTTCAGATTTCCACACATAATCAGGACAGTTCAGATTTGCACACAGAAaatacacacagaaaaaaaaaacacactaaatgaTGGTGGGGCGCACATTCCCCTTAAAAGACAGCCATACAGCAGTATGATGGGTTATAGTGAGGaaccaaagaaaaacaaatgctacataAAAGACGATTACATTCGTTAAGATCAAAACATGGCTTCCTTTAAATCTGGGATTTAACAAAATGTTTTAGCGCCATTCCATCACAGGCATGTTTCTGGCTGAAATTTCAGTATCTTTTTTTTCTCGTCAACTGTATGCAAGATCAGAACATTAttaccagtgcttaatttgtaaattgcgaggtcccggaacagatcagggtaacgTATCCGGCATGTTACCAGAGGAAGGAGAGGTTTCGCGGATGAAATTGAAGAGCGAGGGTGGGGGTGTTGGGTGGGTTGTGATGGGGAGGTGTAGTTTCACGGATGAAATTGAAGAGTGGGGATGGGGAGGTGTTGGGTTAGGATGGGGAGGTGTGttgcagacgaaagtgaagagggtttgGGAGTCGCGGAAAAAGTTATGTTGTGGTAGCGGAGGGGGTTTGTGCGATTAGGAGAGGGAATTGTGTAATATCAGCAGAAATTAATTCgtaaattgcgaggtcccggaacagattaGAGTAACGGATCTGGCATGTTACCAGAGGAGGGAGAGGTGTCGCAAACGAAATTGAAGAGCGGGGGGGAGGGGGGATGTAGGTGTGTcacagacgaaagtgaagagggttggggagtaaCGGAAAAAGTTGTAGTTGTAGAGGGGGGTTTGTGTGAtgaggagggggatcagtaaaatatATGCAGTGCTTActttgtaaattgcgaggtcccAGAACACGAGGTCTGGCATGTTACCAGAGAGGGAGAGGTGTCTGGGACGAAAGTAATGAGCGGGGAAGGAGAGATGTGTTGTGAACGAAAGTGATTCTCCGGGTGGGTGGGGGTACGGGGGGTGtcacaaacaaaaatgaagagGAGGGGGGggtaggggggggggggtgttaggGGGATATGGGGGTGTcacagacgaaagtgaagagggttggaaAGTTGCGGACAAAGTTGTAATTGTAGTTGCGGAGGGGGTTCATGCAAtgaggagggggatcagtaaaatgaggtgccggatccggcTTGTTCCggtacaaattaagcactggttatCAGTAGAGACAGTATCCTTTGTAAAGGTATTTTTAAAACAGCACTATATGCATAGATTTGAAATATTAATATGCCCTCTGAATGAAAATTTGTGTTGTCAGCTGTTCGAAATTGGAGGACAAAAAATACCAAATAATAAATCCAAATGTTTCTGCTTAACTTGTGTCATATCCAACTCTTAAATACTGACTTTTGAAACAGATTGCAAATACAGCACTGTTTGAGGTGCATATTACAGTGTAATAACTGATGTAGTAGATTGCATACCTTAATTTCAGGATTCAGGAACCTGCACACTTCTTTAGACTTCTGGTTAACTGCTTTGGATGGCAAGTGATGAGACCAgcaaaagacaaataaatacacaaaatgttTACTTGAAATCATAATCCGTCTTAAATATCATTAGTCAAACGAAACAGAATGAAATCAGGAAGTATCTCCGAGTACTTGATCATTAAAACATATTGAATACATCAAAATTAAAATCCTTTCATGAATGGTTTAAGATTGTACAAAAAGCTGTCCTTAGGTTTGGGTGAGGAAATAAAGAGAGACAACTGAACATCTGAGGTGAAGGATCCTCTAGGTTTGTGATGACTAAAAGCTGACTAAAGGTATAGGATGTTCATTTAAAGGGTGATGGAGAGCCCCCTCTGTCAGAGCAAGGGTTAGGCACTGAAAATTGACAAGAGAGTCCCATAGATTACATTTAACCTGCTTCAATCAGCAGAATGCCTGACACAGTGGTATCTGTGAAGCTGTGACCGTCAGTGCCATCCCAATCTCCCGAAACAAGGGGCTTGTACTGGGATACTGAATAGATTTCATTATCTGGGTAGACAACTCTCACCCGAGGGCAAAAGTGAATGTCAAAACATCCATTATTTGAAAAGTTCCATGTCCGCACAGTGCCACGAAGATCACATTTAATGCTGCTCAATCTTGTCGCCTCTGAAGAACTCTTCCTCTTGCGGAGGTGTGATTGTATGGCTGTGTACTGCTGTCGCCCACTCAATCACTGCGCATCAAGCAGAAGCAAGGCTTGAACTGGTGAAATCCACCTTAATACAGGCTATGACATTCTTGTATTATCCCTGAAGCACTGTCCACTCAAAATAGCCGGACTAAGAGAAGGTGCAGCCGGTACCTCTCCGTGGATCCCATCAATACTGTCGGTTCCAGAGATAAAGAGTGCTCCGTGCCTTaaaaagaggacagaagagtagCAACAGCAGCATACTCTGGGATAACCGCATCGAGCCTGATCCCATGCCTTCCACTTGTTGTGTGCTGCTATGACTAGTGATTGCTAGTAAGACGAAGAGCACTCGAggttaaaatgaaaaagaaaaaaaaggagaaaaacaaGTCTGGAAGTCTCAGTCTAGCAAGTTGCCATGCTCCTGGGCTCTGGTAAGGCTGTCTTTGCGGTGCAAGTGATGAACCCCCATCCTCTTGGGACTCTTCAGAGGTCGCGAGGAGCCAGTCCGAGGGGGCTTATCTGCATAATCCTCAAGGGAAGAAAGAACCCTTGAGCCAATGACAGGAAAGTCCTGGGGAAGGACATCTCGCTCTTCTGCTGAACTTCCCGCCGATCCAACATCTTCTGCAAACTCTTGACGCTTCGCAGAGGCAGGACTACTCTCAATGGTGACCATAGTGTCACCGCTAGCACCATCATTATCAAGTGGATCCAGAGCCATCAGAAGGTGTTCACCTTCTTCATGGGAAAAGTCGCCACCATATTGTGTCTTCTTTGCCCGAAGGTCTGCCATGCTGCTGGTGTCTGTGTCCAAACTTGACTCTCTACTTGCTGTCCAGCTCTGAGCCGAGGATCCCTCCTCACCATCAGAGTAAGCACCTCTCAGAGCACCAACTCCTGATTTTCCATTATGACTTCTTTGGAGATCTTTTACCGTCTCACTGCTGAAGGATGTGCGGTTGACAAGGGAGCCATCTGAAGAAGGTGCCATTTTTTCAACAAACATGCGCTGCCAGCTGGCTAGAAGGTCCTCCTCGGAGCTTCCAGAACTGGCAAAGGCGCTGGGCGGCTGAGGGGGGCTGCTAAAGGGACTTGAATGACTGGAGAGTGTGTCTGTAGCATCCATCTGTGGAGGTGTCCTCTGGTGAGAAGCAATCCCTCCACCGGAAGATGAGGAGGTTCCAGATCGCCAACCCCCATCAGATATGGCAGGGCTATTAGGCACTGTGCGCTGGCGCTCGGCTGCCTCTTCTTCATTCTGCACAAGACTCAAAGAAATAGCCTGACGAGTAGCGTAGGTGCAATTGGGCAGTGGGCTGTTCTTGGGGATCTTGACTTTATCATCAGAAGAAAACTCAATCACTTTGCGACCTGGGTAGAGCGGGTTTGGTGGTGAAGGAGTAGGGTAAGGATTCAGCTTCTCGAAAGAGGGAGCTGCACCATCATCTCCTGTAGGACCATCAAGGCTGCCCTGGCTTCGACACATGCCATTGACATGCTGCTGGTCAGTATCAGCTACCGCAGGAGGCCTAGCAGGAACAGGACCACCATTTTCCCGCCCTCCATCATCATCTTGTGGTCCCGTCATGTCCACGTGTACAAAGACATCCTCAGCCACAGGCCGACCTGCACTGCTGCTAGACTGAGCCGAGTTGAGCACCAGGGGCTCGGGTTTCTCAAGAACACGAGCAATGACCGAAGTGGGCACTACATCTGCAGGAGTCAGGCTTAGAGTGTCAGGATCCTGGGCTTGAGCTCCCTGAGTCTTGTTGGGCAAGCTGCTCTTCATATGCTTGTTCACCATGTCCTGTAGCTCATATGGCAACTGCAAAACATTACagaaaatataaacacacacacacaaaactggaTAATGAGAACATTTGCGTTACTACCAACAGGCATTTAGTTAGAACAGCCAACAGTTCAGTTCACATCTAGTGAAAAGCTTATTAAAGACCGACCCCACTCCCGAAAATACAATGTATTGTAAGAATGTTTGCACTGTCTTTACCAGACAATCGAAGCAGCAGTGATTAGGacaaaaacaacaagagaaaGTACCTTCGTCTTTGTGTCAAGAAAGAAAGTTTCAATTAAAAGCATAAGGGTGGGAATCTATATCCTTGAATTTCAGTGAAAACCATGCCTCTAATCTTGTCTAGTCTGATACTTTCTATGGAACCACATTTGTTGCTATGAGACCTATGTAGCTTgcacatttcgtcaccttagaattataaggttctatctggttctgaatgattttgagatattgagcttcaaagtttttgcattccatatagcaaacaacatgtgtgtGACAGTTCTCTTTCagacattaacatgacagagaccctaacggttctctaaatgcaaatgagcaaAGTTCTCTTACacttgcaaattggagtaaaaaaaccacggtaaatgcagatagaaccttctcattctgaaatgtcattttccgcttggaattataaggttctatctgccagctcattcattgaagcattatttttcaagaaatacaatcaaaaaatatataaattggtgttgtaacaatattttGATGCTGGAGAAAGTTAAATTTTGGTTTCtacaacatttatttcatgttttaggatatTTATTCTTGTTCAAATTGAGCTTACAAGGCTgggctaaatatttttttccagagcGGATGTTAATTTgatctaattaatatgttaatatttatgcaattttatgctttatatgaattattgaatcatATTTATTGACTTATATGCcctataaattaaattaagtatttgcccttcaaatattaaatttaaagaccaAAAGAAACAGACGGTgaccaaatgagtttaataaacactgaaaagtgtttcactgactataacaaataaatatatttcacattcaATATTTACGTTTTTTAATATTCATCtctttttcaacaatataaaatgtaacatttcatatCAATGTCTGCGATGCAGtgccacagtgggtagcacgatcgccttacagcaagacaaacgctggttcgagcctcagctgggtcagttggcatttctgtgtggagtttgcatgtactctccGTTTTGCTGtatgttttctccgggtgctctggtttcccc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013544 True 5579 lncRNA 0.43 2 3979927 3985680

Neighbor

gene id symbol gene type direction distance location
XLOC_005731 lrrc73 coding upstream 13672 3954540 ~ 3966255 (+)
XLOC_005730 yipf3 coding upstream 29254 3938526 ~ 3950673 (+)
XLOC_005728 timm23b coding upstream 53748 3880882 ~ 3926179 (+)
XLOC_005729 CU019624.1 coding upstream 72030 3895363 ~ 3907897 (+)
XLOC_005727 qkib coding upstream 136235 3667230 ~ 3843692 (+)
XLOC_005733 NA coding downstream 148063 4133743 ~ 4134113 (+)
XLOC_005734 NA coding downstream 195551 4181231 ~ 4192036 (+)
XLOC_005735 dlk2 coding downstream 220044 4205724 ~ 4213909 (+)
XLOC_005736 mea1 coding downstream 239493 4225173 ~ 4232690 (+)
XLOC_005737 NA coding downstream 347065 4332745 ~ 4335902 (+)
XLOC_005726 NA non-coding upstream 359099 3619266 ~ 3620828 (+)
XLOC_005725 AL935294.2 non-coding upstream 718966 3259543 ~ 3260961 (+)
XLOC_005723 NA non-coding upstream 1034937 2943281 ~ 2944990 (+)
XLOC_005722 NA non-coding upstream 1051472 2923920 ~ 2928455 (+)
XLOC_005739 NA non-coding downstream 412471 4398151 ~ 4408956 (+)
XLOC_005744 NA non-coding downstream 567712 4553392 ~ 4553670 (+)

Expression


Co-expression Network