XLOC_005727 (qkib)


Basic Information

Item Value
gene id XLOC_005727
gene name qkib
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 3667230 ~ 3843692 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011345
AATATGGTGGGGGAAATGGAAACGAAAGAGAAGCCGAAGCCGACCCCAGATTATCTGATGCAGCTCATGAACGATAAGAAACTGATGAGCAGTTTGCCCAACTTCTGCGGGATCTTCAACCACCTCGAACGGCTTCTCGATGAAGAGATCAGCAGGGTACGAAAGGACATGTACAACGACACGTTAAACGGCAGCACGGAGAAGAGAAGCTCCGAGCTCCCGGACGCCGTCGGCCCCATCGTTCAGCTCCAAGAGAAACTCTATGTGCCTGTTAAGGAATATCCTGATtttAATTTCGTGGGCCGGATCCTGGGACCCCGGGGACTCACAGCCAAACAGCTGGAGGCAGAGACTGGATGCAAGATCATGGTGAGAGGGAAAGGCTCCATGAGGGACAAGAAGAAG
>TCONS_00011346
ATGGTGGGGGAAATGGAAACGAAAGAGAAGCCGAAGCCGACCCCAGATTATCTGATGCAGCTCATGAACGATAAGAAACTGATGAGCAGTTTGCCCAACTTCTGCGGGATCTTCAACCACCTCGAACGGCTTCTCGATGAAGAGATCAGCAGGGTACGAAAGGACATGTACAACGACACGTTAAACGGCAGCACGGAGAAGAGAAGCTCCGAGCTCCCGGACGCCGTCGGCCCCATCGTTCAGCTCCAAGAGAAACTCTATGTGCCTGTTAAGGAATATCCTGATtttAATTTCGTGGGCCGGATCCTGGGACCCCGGGGACTCACAGCCAAACAGCTGGAGGCAGAGACTGGATGCAAGATCATGGTGAGAGGGAAAGGCTCCATGAGGGACAAGAAGAAGGAGGAACAAAACCGAGGCAAGCCCAACTGGGAGCATTTGAACGAGGACCTCCATGTGCTCATCACAGTGGAGGATGCCCAGAACCGAGCTGAGATCAAGCTCAAGCGGGCGGTGGAGGAAGCCGAAGGAGAGGACAGTCTGAAGAAGATGCAGCTGATGGAGCTGGCCATTCTCAACGGCACCTACAGAGACGCCAATATCAAATCACCTGCCCTTGCATTCTCTCTTGCAGCGAGTGCCCAGGCGCCTCGGATCATCACCGGCCCTGCACCTGTCCTGCCACCCACAGCTCTGCGCACGCCTACGCCTGCGGGACCCACCATCATGCCTCTCATCCGCCAGATCCAGACCGTCATGCCCAACGGCACGGCCCACCCTGCCACCGCCACCCTAGTGCCGCCCGGTCCAGAGTCGGGCTTGATTTACGCCACGCCCTACGAGTACCCCTACACGCTGGCACCCGCCACCTCCATCCTGGAGTATCCCATCGACTCCAGCGGGGTGTTAGGTAAGCAGAGCTACACCTGCACAACTCTCCAATCAACCCCCTCAGCATGGCCCTGCGGAAAGACTGGGCGGTATGACGATCAACACATTTTGCTATAG
>TCONS_00011347
ATGGTGGGGGAAATGGAAACGAAAGAGAAGCCGAAGCCGACCCCAGATTATCTGATGCAGCTCATGAACGATAAGAAACTGATGAGCAGTTTGCCCAACTTCTGCGGGATCTTCAACCACCTCGAACGGCTTCTCGATGAAGAGATCAGCAGGGTACGAAAGGACATGTACAACGACACGTTAAACGGCAGCACGGAGAAGAGAAGCTCCGAGCTCCCGGACGCCGTCGGCCCCATCGTTCAGCTCCAAGAGAAACTCTATGTGCCTGTTAAGGAATATCCTGATtttAATTTCGTGGGCCGGATCCTGGGACCCCGGGGACTCACAGCCAAACAGCTGGAGGCAGAGACTGGATGCAAGATCATGGTGAGAGGGAAAGGCTCCATGAGGGACAAGAAGAAGGAGGAACAAAACCGAGGCAAGCCCAACTGGGAGCATTTGAACGAGGACCTCCATGTGCTCATCACAGTGGAGGATGCCCAGAACCGAGCTGAGATCAAGCTCAAGCGGGCGGTGGAGGAAgtactggtaatattcctcagagattttGCCGAAGGAGAGGACAGTCTGAAGAAGATGCAGCTGATGGAGCTGGCCATTCTCAACGGCACCTACAGAGACGCCAATATCAAATCACCTGCCCTTGCATTCTCTCTTGCAGCGAGTGCCCAGGCGCCTCGGATCATCACCGGCCCTGCACCTGTCCTGCCACCCACAGCTCTGCGCACGCCTACGCCTGCGGGACCCACCATCATGCCTCTCATCCGCCAGATCCAGACCGTCATGCCCAACGGCACGGCCCACCCTGCCACCGCCACCCTAGTGCCGCCCGGTCCAGAGTCGGGCTTGATTTACGCCACGCCCTACGAGTACCCCTACACGCTGGCACCCGCCACCTCCATCCTGGAGTATCCCATCGACTCCAGCGGGGTGTTAGGTAAACACGCCCCCTGCCCTGACTCCCACTTATCGGACTGGCTGGACTCCCCCGGCCTCCTTCATTCTGTCTGCTTTCATTcggttttgtatttttgttttctgtaa
>TCONS_00011348
ATGGTGGGGGAAATGGAAACGAAAGAGAAGCCGAAGCCGACCCCAGATTATCTGATGCAGCTCATGAACGATAAGAAACTGATGAGCAGTTTGCCCAACTTCTGCGGGATCTTCAACCACCTCGAACGGCTTCTCGATGAAGAGATCAGCAGGGTACGAAAGGACATGTACAACGACACGTTAAACGGCAGCACGGAGAAGAGAAGCTCCGAGCTCCCGGACGCCGTCGGCCCCATCGTTCAGCTCCAAGAGAAACTCTATGTGCCTGTTAAGGAATATCCTGATtttAATTTCGTGGGCCGGATCCTGGGACCCCGGGGACTCACAGCCAAACAGCTGGAGGCAGAGACTGGATGCAAGATCATGGTGAGAGGGAAAGGCTCCATGAGGGACAAGAAGAAGGAGGAACAAAACCGAGGCAAGCCCAACTGGGAGCATTTGAACGAGGACCTCCATGTGCTCATCACAGTGGAGGATGCCCAGAACCGAGCTGAGATCAAGCTCAAGCGGGCGGTGGAGGAAGCCGAAGGAGAGGACAGTCTGAAGAAGATGCAGCTGATGGAGCTGGCCATTCTCAACGGCACCTACAGAGACGCCAATATCAAATCACCTGCCCTTGCATTCTCTCTTGCAGCGAGTGCCCAGGCGCCTCGGATCATCACCGGCCCTGCACCTGTCCTGCCACCCACAGCTCTGCGCACGCCTACGCCTGCGGGACCCACCATCATGCCTCTCATCCGCCAGATCCAGACCGTCATGCCCAACGGCACGGCCCACCCTGCCACCGCCACCCTAGTGCCGCCCGGTCCAGAGTCGGGCTTGATTTACGCCACGCCCTACGAGTACCCCTACACGCTGGCACCCGCCACCTCCATCCTGGAGTATCCCATCGACTCCAGCGGGGTGTTAGGTGCTGTGGCAACTAAAGTTCGAAGGCACGAACTGCGCGTCCATCCTTACCAAAGGGTAGTGACCGCAGAAAGAGGTTAG
>TCONS_00011349
GCCGAAGGAGAGGACAGTCTGAAGAAGATGCAGCTGATGGAGCTGGCCATTCTCAACGGCACCTACAGAGACGCCAATATCAAATCACCTGCCCTTGCATTCTCTCTTGCAGCGAGTGCCCAGGCGCCTCGGATCATCACCGGCCCTGCACCTGTCCTGCCACCCACAGCTCTGCGCACGCCTACGCCTGCGGGACCCACCATCATGCCTCTCATCCGCCAGATCCAGACCGTCATGCCCAACGGCACGGCCCACCCTGCCACCGCCACCCTAGTGCCGCCCGGTCCAGAGTCGGGCTTGATTTACGCCACGCCCTACGAGTACCCCTACACGCTGGCACCCGCCACCTCCATCCTGGAGTATCCCATCGACTCCAGCGGGGTGTTAGGTGCTGTGGCAACTAAAGTTCGAAGGCACGAACTGCGCGTCCATCCTTACCAAAGGGTAGTGACCGCAGAAAGAGCCACCACTGGCAACTAACCCTGACCTTCTGACCTCCTCACCCAATGATGACCTGCCCATTACCTGCCTGCAGAT
>TCONS_00011350
AAAAGCTatgcgaagaaaaaaaaaaaaacatgaattttgtAAAAACACATGTCAGCGGTATTTACATATGGGAGAAAGAAGAAGTATTATTTGTGCCTTATCTtgtataatttaaatgatttttgttcTTCCATCTGTCTGATCTGATCTGTTTTCTGGTGATGTTATTGCAATCCAAGCAGGTGCTGTGGCAACTAAAGTTCGAAGGCACGAACTGCGCGTCCATCCTTACCAAAGGGTAGTGACCGCAGAAAGAGCCACCACTGGCAACTAACCCTGACCTTCTGACCTCCTCACCCAATGATGACCTGCCCATTACCTGCCTGCAGATATCACACCTCTGCcctaaaaaaatcaatcaatcaaagacAAAACGAGTATCTAAGAGCCGTCACAGCTTTTCCTACAGCTCAGCGGTTGGACACGGGAGTGGATCGGACGTTCCTGTCGCTGTAGATCTGCACTCTTTATAAGCAATAAGCAATAATGATTTGCCCCACACCCTCTTAAGTCAAAGCCAGAGCTTCACGAGACG

Function

symbol description
qkib Predicted to enable mRNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in hindbrain neural rod; midbrain neural rod; nervous system; and somite. Orthologous to human QKI (QKI, KH domain containing RNA binding).

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081028-54 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in hindbrain neural rod; midbrain neural rod; nervous system; and somite. Orthologous to human QKI (QKI, KH domain containing RNA binding).

Ensembl:

ensembl_id ENSDARG00000002026

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011345 False 405 mRNA 0.52 3 3667230 3755361
TCONS_00011346 False 1008 mRNA 0.57 6 3667233 3821558
TCONS_00011347 False 1044 mRNA 0.56 8 3667233 3826370
TCONS_00011348 False 990 mRNA 0.57 7 3667233 3832831
TCONS_00011349 False 537 mRNA 0.61 4 3819475 3843488
TCONS_00011350 True 535 lncRNA 0.43 2 3832570 3843692

Neighbor

gene id symbol gene type direction distance location
XLOC_005726 NA coding upstream 46402 3619266 ~ 3620828 (+)
XLOC_005725 AL935294.2 coding upstream 406269 3259543 ~ 3260961 (+)
XLOC_005724 prph2b coding upstream 408458 3252950 ~ 3258772 (+)
XLOC_005723 NA coding upstream 722240 2943281 ~ 2944990 (+)
XLOC_005722 NA coding upstream 738775 2923920 ~ 2928455 (+)
XLOC_005728 timm23b coding downstream 37190 3880882 ~ 3926179 (+)
XLOC_005729 CU019624.1 coding downstream 51671 3895363 ~ 3907897 (+)
XLOC_005730 yipf3 coding downstream 94834 3938526 ~ 3950673 (+)
XLOC_005731 lrrc73 coding downstream 110848 3954540 ~ 3966255 (+)
XLOC_005732 NA coding downstream 136235 3979927 ~ 3985680 (+)
XLOC_005718 BX571701.4 non-coding upstream 834023 2833092 ~ 2833207 (+)
XLOC_005733 NA non-coding downstream 290051 4133743 ~ 4134113 (+)
XLOC_005734 NA non-coding downstream 337539 4181231 ~ 4192036 (+)
XLOC_005737 NA non-coding downstream 489053 4332745 ~ 4335902 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G37282 NA non-coding CI01000005 null 3477220 ~ 3479704 (+)
striped catfish (Pangasianodon hypophthalmus) G35888 NA non-coding NC_047596.1 CM018542.1 30613623 ~ 30613865 (-)