RNA id: TCONS_00011346


Basic Information

Item Value
RNA id TCONS_00011346
length 1008
RNA type mRNA
GC content 0.57
exon number 6
gene id XLOC_005727
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 3667230 ~ 3843692 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTGGGGGAAATGGAAACGAAAGAGAAGCCGAAGCCGACCCCAGATTATCTGATGCAGCTCATGAACGATAAGAAACTGATGAGCAGTTTGCCCAACTTCTGCGGGATCTTCAACCACCTCGAACGGCTTCTCGATGAAGAGATCAGCAGGGTACGAAAGGACATGTACAACGACACGTTAAACGGCAGCACGGAGAAGAGAAGCTCCGAGCTCCCGGACGCCGTCGGCCCCATCGTTCAGCTCCAAGAGAAACTCTATGTGCCTGTTAAGGAATATCCTGATtttAATTTCGTGGGCCGGATCCTGGGACCCCGGGGACTCACAGCCAAACAGCTGGAGGCAGAGACTGGATGCAAGATCATGGTGAGAGGGAAAGGCTCCATGAGGGACAAGAAGAAGGAGGAACAAAACCGAGGCAAGCCCAACTGGGAGCATTTGAACGAGGACCTCCATGTGCTCATCACAGTGGAGGATGCCCAGAACCGAGCTGAGATCAAGCTCAAGCGGGCGGTGGAGGAAGCCGAAGGAGAGGACAGTCTGAAGAAGATGCAGCTGATGGAGCTGGCCATTCTCAACGGCACCTACAGAGACGCCAATATCAAATCACCTGCCCTTGCATTCTCTCTTGCAGCGAGTGCCCAGGCGCCTCGGATCATCACCGGCCCTGCACCTGTCCTGCCACCCACAGCTCTGCGCACGCCTACGCCTGCGGGACCCACCATCATGCCTCTCATCCGCCAGATCCAGACCGTCATGCCCAACGGCACGGCCCACCCTGCCACCGCCACCCTAGTGCCGCCCGGTCCAGAGTCGGGCTTGATTTACGCCACGCCCTACGAGTACCCCTACACGCTGGCACCCGCCACCTCCATCCTGGAGTATCCCATCGACTCCAGCGGGGTGTTAGGTAAGCAGAGCTACACCTGCACAACTCTCCAATCAACCCCCTCAGCATGGCCCTGCGGAAAGACTGGGCGGTATGACGATCAACACATTTTGCTATAG

Function

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081028-54 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in hindbrain neural rod; midbrain neural rod; nervous system; and somite. Orthologous to human QKI (QKI, KH domain containing RNA binding).

Ensembl:

ensembl_id ENSDART00000189841

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013543 lncRNA upstream 46405 3619266 ~ 3620828 (+) True XLOC_005726
TCONS_00011344 lncRNA upstream 406272 3259543 ~ 3260961 (+) True XLOC_005725
TCONS_00013376 lncRNA upstream 722243 2943281 ~ 2944990 (+) True XLOC_005723
TCONS_00013541 lncRNA upstream 738778 2923920 ~ 2928455 (+) False XLOC_005722
TCONS_00011350 lncRNA downstream 11012 3832570 ~ 3843692 (+) True XLOC_005727
TCONS_00011353 lncRNA downstream 73805 3895363 ~ 3907894 (+) False XLOC_005729
TCONS_00011354 lncRNA downstream 73845 3895403 ~ 3907897 (+) True XLOC_005729
TCONS_00013544 lncRNA downstream 158369 3979927 ~ 3985680 (+) True XLOC_005732
TCONS_00013545 lncRNA downstream 312185 4133743 ~ 4134113 (+) True XLOC_005733
TCONS_00011343 mRNA upstream 408461 3252950 ~ 3258772 (+) True XLOC_005724
TCONS_00011342 mRNA upstream 753334 2908764 ~ 2913899 (+) True XLOC_005721
TCONS_00011341 mRNA upstream 765526 2894536 ~ 2901707 (+) True XLOC_005720
TCONS_00011340 mRNA upstream 775222 2861265 ~ 2892011 (+) True XLOC_005719
TCONS_00011339 mRNA upstream 795358 2861265 ~ 2871875 (+) False XLOC_005719
TCONS_00011351 mRNA downstream 59324 3880882 ~ 3909919 (+) False XLOC_005728
TCONS_00011352 mRNA downstream 59653 3881211 ~ 3926179 (+) True XLOC_005728
TCONS_00011355 mRNA downstream 116968 3938526 ~ 3950673 (+) True XLOC_005730
TCONS_00011356 mRNA downstream 132982 3954540 ~ 3966243 (+) False XLOC_005731
TCONS_00011359 mRNA downstream 133157 3954715 ~ 3965998 (+) False XLOC_005731
TCONS_00011338 other upstream 834026 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011320 other upstream 1280700 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011310 other upstream 1901611 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011289 other upstream 2817807 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011277 other upstream 3156094 502319 ~ 511139 (+) True XLOC_005673
TCONS_00011360 other downstream 141209 3962767 ~ 3966255 (+) True XLOC_005731
TCONS_00011389 other downstream 2164218 5985776 ~ 6001981 (+) True XLOC_005757
TCONS_00011399 other downstream 2592726 6414284 ~ 6414400 (+) True XLOC_005764
TCONS_00011412 other downstream 3559960 7381518 ~ 7381633 (+) True XLOC_005774
TCONS_00011427 other downstream 4485109 8306667 ~ 8317874 (+) True XLOC_005783

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000005_03494256_03497235.mRNA True 2438 mRNA 0.39 3 CI01000005 3494077 ~ 3499017 (-)