XLOC_005719 (XPO5)


Basic Information

Item Value
gene id XLOC_005719
gene name XPO5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 2861265 ~ 2892011 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011339
ATGGGCGAACAGATGCGTGCGCTGTGCGAGGAGCTTATAAAAGCTGTGAATGTGATGATGGAGGCAGAATCCAGCCAAACATACCGACTGGAGGCCTTTAAGTTTATTGAAGATTTCAAGGAGAAAAGTCCCTTCTGCGTTGAATGTGGTCTTCAGCTAGCAGAGAAGTCCCAGACTGCAGTGATAAGACACTTTGGACTGCAAATACTGGAGCATGTGGTCAAGTTTCGCTGGAATAACATGGCACCGCAAGACAAGCTCCAGCTGAAGAACTGCACCATGGGCATGTTGTCAAATGGTACACATCCGATTCTCCAAGAGGAATGTCATGTTAAGGACGCCCTCTCCCGCATCGTGGTGGAGATGATCAAGAGAGAGTGGCCGCAGCAGTGGCCCGATATGCTGAAGGAGATGGAGGCCCTCACCGCTCTCGGGGATGCTCAGACCGAGCTTGTAATGCTGGTTCTGCTGCGGTTGGCCGAGGATGTGATCACGTTTCAGACGTTGCCCTCTCAGAGACGGCGGGACATCCAGCAGACGCTCACACAGAATATGGACAGCGTCTTCACTTTCCTGCTGGGGATACTGCAGCTTCACGTCAACGAGTACAGCAAGATGATGAAAGCTCACTTGCGTGTTGGTGTGGCTACTCTCAACACTCTAGCAGGCTACATTGACTGGGTTTCTCTGAGCCACATCACCAGTCAAAACTGCCGTCTTCTGGAGATCTTGTGCCTGTTGTTGAGTGAACCTGAGCTGCAGCTGGAGGCCGCAGAGTGTCTGCTAATTGCGATTAGTAGGAAA
>TCONS_00011340
ATGGGCGAACAGATGCGTGCGCTGTGCGAGGAGCTTATAAAAGCTGTGAATGTGATGATGGAGGCAGAATCCAGCCAAACATACCGACTGGAGGCCTTTAAGTTTATTGAAGATTTCAAGGAGAAAAGTCCCTTCTGCGTTGAATGTGGTCTTCAGCTAGCAGAGAAGTCCCAGACTGCAGTGATAAGACACTTTGGACTGCAAATACTGGAGCATGTGGTCAAGTTTCGCTGGAATAACATGGCACCGCAAGACAAGCTCCAGCTGAAGAACTGCACCATGGGCATGTTGTCAAATGGTACACATCCGATTCTCCAAGAGGAATGTCATGTTAAGGACGCCCTCTCCCGCATCGTGGTGGAGATGATCAAGAGAGAGTGGCCGCAGCAGTGGCCCGATATGCTGAAGGAGATGGAGGCCCTCACCGCTCTCGGGGATGCTCAGACCGAGCTTGTAATGCTGGTTCTGCTGCGGTTGGCCGAGGATGTGATCACGTTTCAGACGTTGCCCTCTCAGAGACGGCGGGACATCCAGCAGACGCTCACACAGAATATGGACAGCGTCTTCACTTTCCTGCTGGGGATACTGCAGCTTCACGTCAACGAGTACAGCAAGATGaaatgtgttgctgGTCTGGATTTAAAGATGAAAGCTCACTTGCGTGTTGGTGTGGCTACTCTCAACACTCTAGCAGGCTACATTGACTGGGTTTCTCTGAGCCACATCACCAGTCAAAACTGCCGTCTTCTGGAGATCTTGTGCTTGTTGTTGAGTGAACCTGAGCTGCAGCTGGAGGCCGCAGAGTGTCTGCTAATTGCGATTAGTAGGAAAGGCAAGTTAGAGGAGAGGAAACCATTTATGGTGCTCTTTGATGAAGCTGCAATGAACTACATCTTGTCTGCAGCACAGTCAGCAGATGGTGCAGCTCTGTGCAACCAATCCTCAGGTGGCATCGATGAAAGGAGATACACTTTTCTGAAGAGGCTCTGTCAGGTTCTCTGTGCTCTGGGCAGTCAAGTCTGCTCTCTAGTGGGTTCAGATGTGGAAGTGCAAGTTCCTGTTAACTTGAATAAATATTTGGAAGCTCTTCTAGCGTTCACTACTCATCCCAGCCAGTTTCTGAGGTCGTCAACGCAGATGACCTGGGGAATCATATTCCGACATGAAATACTGTCAAAGGATCCAGTAGTTGGCCAAATGGCCATCAAATATTTAAGAGCGACGAGGATCAATCTTGTAAAAACTGGATTTCCCTCCAAGAATGATTGTCCAGGCTGTGAATTCTCCAGAGTGGACTTTGACAGCGATGAAGATTTCAACTCCTCCTTTAATTCTTCCAGGGCTCAGCAGGGGGAAGCGGTTCGCCTCACTTGTAGAATCGTCCCTTTTAAAGCCTTTCAAATTGCAAGGGACTGGATGCAGTATCAGATCAGCACACCTATAGATGCTGGAAAAACAACAGCCAAGACAGAGAAGGGTCTCTGCTCTCCTCTGTCCCCTTCGGTGGTTCAGTGGGAAGCCATGACCACCTTCACTGAAAATGTGTTTGGGCAGCTCTTCAAAATCCTCGAAAAAGAGAAACTCCCCATAGACGAGGGCATGGCGCTGCTGCAGATAGCGGTGAATTTCGAGACCAGAGATCCTCTCATTCTGTCCTGTGTGCTCACCATCGTCTCCACACTCTTCCCCATTCTCACACACCGGCCTCACTTCCTACCTCAAGTACTCTTTAAGATATTTTCTGCAATCACGTTTGAGTTGGTTGATGAACGCAAGGCTCCTCGAACGCGAGCGGTGAAGAACGTCAGAAGACACGCCTGCTCCTCCATCATCAGGATCTGTCGCGATTATTCAGACTTCATGCTGCCGTGCTTCGACCTGATGTATGAGCACGTGAAGAGGCTGTTCTCCGATGAGCTGCTGCTGACTCAGCTGGAGAAATGTGCCCTCATGGAGGCCCTGATACTGATCAGCAATCAGTTTAAAGACTATAAGAAGCAGAAAGCCTTCCTGGAAGAGCTGATGGCCCCGGTCACTGCACTGTGGCTATCGGAGGAGATGAGGAGCGTGTTGTGGGACCCTGCTACTTTTTTGACGTTTGTTGGTGCTGATCAGGAGATCAGTGATTCTGACACTGACGAACAGATGGGCATCAACAGGTCACGGATTAGTCTTTGTGTGCACACCATTCTCGGTGTGGTGAAGCGAGCTCGCTGGCCTGCTGATGCTGACCAGGCCAAAGCTGGAGGTTTTGTGGTGCGCACTGCCTCTGATGGGACCCCAGTCTACAGAAACCCCTGTGCAGAGGCCCTGCAGGCCCTGCTGCCCAACCTTCTGGCACTCATCAGGACCAACAACAGCTTGTTCTTGCCGGAGAACATCACCCGGCTCAGCAAGACCTTTGCTAGAGTCTATGACATTACGGACATGGAGAAGAATTGTGTTTTAGGAATCTCTCAGGTAGTGTTAGACTCCTATGAGGCGGCGGTGTACAAAAACTTTGCTGAGCGCATGCAAGGCTTCTTCTCCTCACTCTTCGAAAACTGTTACCATGTTCTGGGTAATGTGGGTCCCTGCTTGCAGCAAGACTTTTATGGTATCGAGGGTTTGGCAGAGCAGATTGTTGGATCCGCCTTCAACCATCTAGACAGCGTTCCAGACCACAGGCTCCGCCCCCTAATCCATATCCTTGAGATTACGcatgaaatcaaaaataaatga

Function

symbol description
xpo5 Predicted to enable RNA binding activity and nuclear export signal receptor activity. Predicted to be involved in RNA export from nucleus. Predicted to act upstream of or within intracellular protein transport and nuclear export. Predicted to be part of RNA nuclear export complex. Predicted to be active in cytoplasm and nucleus.

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03016 Transfer RNA biogenesis
ko03036 Chromosome and associated proteins

Ensembl:

ensembl_id ENSDARG00000098868

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011339 False 804 mRNA 0.51 6 2861265 2871875
TCONS_00011340 True 2721 mRNA 0.50 24 2861265 2892011

Neighbor

gene id symbol gene type direction distance location
XLOC_005717 si:ch211-233m11.1 coding upstream 11408 2830574 ~ 2849857 (+)
XLOC_005718 BX571701.4 coding upstream 28058 2833092 ~ 2833207 (+)
XLOC_005716 wdr11 coding upstream 33047 2732951 ~ 2828218 (+)
XLOC_005715 NA coding upstream 184929 2671432 ~ 2676336 (+)
XLOC_005714 plpp4 coding upstream 196152 2538636 ~ 2665113 (+)
XLOC_005720 CABZ01087629.1 coding downstream 2525 2894536 ~ 2901707 (+)
XLOC_005721 wu:fj16a03 coding downstream 16753 2908764 ~ 2913899 (+)
XLOC_005722 NA coding downstream 31909 2923920 ~ 2928455 (+)
XLOC_005723 NA coding downstream 51270 2943281 ~ 2944990 (+)
XLOC_005724 prph2b coding downstream 360939 3252950 ~ 3258772 (+)
XLOC_005710 CR376766.1 non-coding upstream 474732 2386413 ~ 2386533 (+)
XLOC_005708 CR376766.2 non-coding upstream 508270 2352289 ~ 2352995 (+)
XLOC_005706 NA non-coding upstream 708249 2149770 ~ 2153016 (+)
XLOC_005725 AL935294.2 non-coding downstream 367532 3259543 ~ 3260961 (+)
XLOC_005726 NA non-coding downstream 727255 3619266 ~ 3620828 (+)
XLOC_005729 CU019624.1 non-coding downstream 1003352 3895363 ~ 3907897 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_04332499_04357527 XPO5 coding CI01000005 null 4332490 ~ 4358857 (-)
bowfin (Amia calva) AMCG00001556 LOC104967701 coding CM030143.1 CM030143.1 7774842 ~ 7792880 (+)