XLOC_005716 (wdr11)


Basic Information

Item Value
gene id XLOC_005716
gene name wdr11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 2732951 ~ 2828218 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011335
CATATCTGACGGAGCGTTTTTCTGGACGGAGCAGTAATGGGACGCGCCCCAAACACTTCCTAATAAACACAGCTCGATCattcattacattaaaaaagagCCAAAACATTCCACCTTTTCATGTAGTTTGGATATATGGCTTCAACCATGATTCCGTACACTGTCAACATTAAACTGGCCGCACGGACACTGACCGGAACCCTTAATTTGCAGAACAAGACAGCAGTGGACTGggGTTGGCAGGGTCTGATCGCTCAAGGCTGTCACTCTAGCATCCTCATCATTGATCCAAACACAGCTCAGACCATTCAGGTCCTGGAGAGACACAAAGCCAATGTAGTCAAGGTGAAATGGTCCAGAGAAAACTACCACCACAGTCTGAGCTCACCCTACTCCCTGCGTCTGGCATCTGCAGATGCGGCAGGGAAGATCATTGTGTGGGATGTGGTGAGCGGTATGGCACACTGTGAGATCCAGGAGCACAGCAAACCCATTCAGGATATGGACTGGTTGTGGGCTCAGGATGCTTCTCGTGATCTTCTTCTGGCCGTTCACCCTCCCAACTATATTGTTCTGTGGAACGGAGACACGGGCACCAAACTGTGGAAGAAGAGCTACGCTGAGAACATCCTGTCCTTCTCATTTGACCCCTTTGAGCCCTCTAATCTGGCATTGTTGACCAGCGAGGGTATAGTGTTCATCACAGATTTCTCACACTCTAAGCCGCCGGGCAGCGGAGGCAAGAAGGTTTACATCGCCAGTCCTCACTCCAGCCCAGCCCATAGCAAACCTGCTGCGGCTCAACCCACCGGTGCCAAAAAAGCCCTCAACAAGGTCAAAGTGCTCATCACCAATGAGAAACCCACGGCTGAAGCAGTGACTCTTAATGACTGCCTCCAGCTCTCATATCTGCCATCTAAGAGAAACCACATGCTGCTGTTGTACCCAAGAGAGATCCTCATCCTGGACCTGGAGCTCAGTCAGACTGTTGGTGTGGTGGCTATTGAGCGCTCCGGCGTGCCCTTCATACAGgtgATCCCCTGTGCTCAGAGAGATGCGCTTTACTGCCTCCATGAGAACGGTTGCATCACATTGCGTGTGTGTCGCTCCACAACACCTTCACCTAATGAAACAGTGACTGATCCAGAGCAGAATTCCCAAGAGTTGGTTTACGATCTCCGTTCCCAGTGTGATGCCATCCGTGTGACTAAGACCGTGCGTCCCTATCGAGTGGTCATCTGTCCTGTCAATGAGAACAAGGCCGTGCTGGTGGTCAGTGATGGAAGGGTGATGCTGTGGGAACTCAAGGCTCATGCCAGCAAATCTTCATCCAACCTGAGCTCCGGCTTGCCTCCTTTGTATTCTGCTGTGAATTTCTGCGGGACGCCTTTACGTCAGAATCAGAAATGCATCCCGGATCTTTCTCTGAATTCAATGATTGGTCACAGTCTGATTCCTGGAGTGGACTCTCCGCGACCTCTGGCTGACCAGAAAGAAGTACATCTGAAGTTCCTGTTGACAGGTCTGCTCTCTGGCCTGCCTTTGCCTCCATTCTCCCTGAGGATGTGCCCTCCGCTCACCACCAAAAACATTAACCACTACCAGCCCTTACTGGCTGTGGgTACAAGCAATGGCTCTGTGCTGGTGTACAACTTGACCAGTGGCCTCCTGCACAAAGAGCTCAGTGTCCATTCCTGCGAGGTCAGAGGAATTGAATGGATTAGTTTGACTAGTTTTCTGTCCTTCGCCACCTCCGTCCCCAACAACCTTGGCCTCGTGAGGAATGAGCTGCAGCATGTGGATTTACGCACAGGGCGGTGCTTTGCGTTTCGCGGCGAGCGTGGCAACGATGAACCAGCCATTGAAATGATTAAAGTGTCACATCTGAAGCAGTACCTGGTGGTGGTGTTCAGAGATAAGCCTCTGGAACTCTGGGATGTCCGAACAGGAACCCTGCTGCGTGAGATGGCCAAGAACTTCCCTACGGTCACTGCTCTGGAGTGGTCTCCTTCACACAACCTCAAAAGCCTGAAGAAGAAGCAGCTTGCGGCGCGAGAAGCCATGGCCAGACAGACCACGCTCGCGGATGCAGAACAGAGCAGTGTGGAGTCCTCCGTCATCAGtctgttgCAGGATGCGGAGAGTAAGTCTGAAAGCAGTCAGGGCATATCGGCCCGAGAACACTTTGTGTTTACTGACACCGACGGTCAGGTCTATCACATCACTGTCGAAGGAAACACTGTGAAGGACGGCGCTCGTATTCCTCCTGATGGCAGTATGGGAAGCATTGCCTGTATTGCATGGAAAGGAGACACTCTAGTTCTGGGAGATGTTGATGGAAACCTCAACTTTTGGGACCTGAAGGCCCGTCTTTCAagAGGTGTTCCTACACACCGCGGCTGGGTGAAGAAGATACGCTTTGCTCCTGGAAAAGGCAACCAGAAACTCTTGGTGATGTACACAGATGGAGCTGAGGTCTGGGACACTAAAGAGGTGCAGATGGTGAGCAGCATCAGAGTGGGTCGCAATGTTAACTACAGAATCCTGGATATCGACTGGTGCACGTCTGATAAAGTGGTGCTGGCGTCAGATGACGGCTGTGTCAGAGTGCTGGAGATGGCCATGAAGTCCGCCAGTTACAGGATGGATGAGCAGGACCTGACAGATCCAGTGTGGTGTCCGTATCTCCTCCTGCCGCGTGCTGCACTCACACTAAAGGCTTTCCTGCTGCTGCAGCCGTGGATGGACACTTTCACCATGGACATCACTCAAGTAGACTACAAAGAGAAAGATGAAATCAAGGGACTGATCCAGGAACAGCTCAACTCTCTCTCCAATGACATCAAAAGTGTCCTGCAGGATCCCAATCTGAGCCTGCTGCAGCGCTGCCTGCTTGTGTCTCGGCTGTTCGGTGATGAATCAGACCTTCAGTTCTGGACGGTGGCTTCTCATTACATCCAGGCGTTTGCTCAGAGCGCTCAGTCCAACGAATCCGTCCCAGAAGGCCAAGCGGCAGCCAGTCATCTGGACATCTGCCATGACATCCTCTGTGAAAGCTCCTTCTTCCAGGGCTTTCAGCTGGAGCGTGTTCGTCTGCAGGAAGTGAAGCGGTCCAGCTATGAACACACCAAAAAGTGTGCAGACCAGCTCCTCCTGCTGGGACAGACCGACCGTGCGGTGCAGTTGCTTTTGGAGACGAGCGCTGACAACTCCAGCTATTACTGTGACTCTCTGAAAGCCTGTCTGGTGACCACCATCACCTCCTCCGGCCCGTCCCAGAGCACCATTAAACTGGTGGCCACGAACATGATCGCCAATGGAAAGCTGGCAGAGGGTGTACAGTTGCTCTGTCTGATTGACAAAGCAGCAGATGCATGTCGCTATCTGCAGACGTATGGAGAATGGACCCGCGCCGCCTGGCTGGCCAAGgtgcgTCTGAATGCAGCGGAGGGTTCAGATGTGCTGAAGCGCTGGGCAGAGCATCTGTGTTCTCCTCAGGTCAATCAGAAGTCAAAGGCCATGCTGGTGCTGCTCTCACTGGGCTGCTTTCAGAAAGTGGGCGAGATGCTCCACAgCATGAGATATTTCGACCGCGCCGCGCTCTTTATCGAAGCCTGTCTGAAATATGGAGTGATGGAGACCAACGATGACATTAATAAGCTGGTCGGAGCCGCGTTTGTGGACTACGCCAAGCTGCTTCGCTCCATCGGACTGAAACAGGGCGCTGTTCACTGGGCGTCCCGAGCCGGAGAGGCTGGAAAGCAGCTTTTGGAGGATCTTTCCCAAACTGAGGGAACGGGCACTGAATCCAGCCCAGCCGACGACACGGACAACAGTCTGGTGAATATTGAATGACCTGTCCAGAAAGAAAGAGAGGTTGAGAGAAGgattccaaaaataaataaaaagatgcaCAGTATCTCCAAAACTTACCCTTAAGCATGTAATCCAGCAACACACTTCAACTCAAAGAGTATTTGTCTGGTTATTATTTGTCTGGTTTTCATAGTAGTCTAAGATTGTGAGATGTGTTGTGTCTGAAAACATTCCTCAAAAACAACCCAGTGGATACTAAACCCGTTCAACCAAATGCATTGTCATGATGAATTATGATGTGACCAAAATAATTGTAATTGATTAGAAGGTGTTCAACACTACTAGAGACTATGAAGCATGTGAATcaaggaatcgagtttgagaccactggctTATTCACTACCAAACTCTCATAACAGTACTTTATTGCTATACATTTGTTCTTGTCCCTAGTTACTGCTGTTGTACGTCTCATAATCTACACCTTTCCCAGAAGTTTAATTATCCTCAAAAGTGATCCTCCCTACATTGATGCACTTTTTTAGTGTAGTACAGACAAATCAGGTGTGTAATCCTCAGCATTAATCAATATCATTCTGCATACACTTccatttacattttacagttttattatagtaaaatctagtgttgtcacgatactggaatataatactgtatataatataatgactgtgattggctgtgaaggtcatcagttctctgaactcaccgctgtttactgagtgtaatcacagatacagggacactggaacATTTTAAAACCACAATTCATTAGTGGAtcgcttgtatgtcagcttatTGACAGACCAGCTGATGgacgtgactttgaaacgctccagtgtccccgtatctgtgtttacacacagtaaacagcggtgagtttggtgaactgatgaccttcccagccaatcacagtcatttctgttgagcatgtgaacacaatagcaAATTAGCAGTGTTTAAGAATTTTCTCAACAGAGCCCAAATGTTCGCGGGAAATGAAAACTTCTGAAATATAGGTATCGGttggtactgaattccagtatAATGAcaaccctacactgtaaaaaaaaaattaattaaatagcggcattaaaatacagaaatttactgtaaaattatagaaatttaccagaaatgtatatttgattaaatttctgtaatttaatgtgtttttttactatatatttctgtgatttaacggtcattttttatgttttttttttttctggcatctcagCTGGCGGAAATAAAAcgtaaaattatggatttttttttacagtgtagtaaaatCCTTTTACTTAAgcaaaatatcatttattttgaGGTAGTGGTGAAGTATCATCCAGGCAAATTCATTAAAGGTTTCACTGTGCGGTATCATGATGGCGGTTTTATAGCTGAGCTTGCTAAAATATGAAAATGGCTGCAATTTGTTGGATATCAAATTCTGTTTCTCTCAGACAACAACAAGAGAATATTCATAAATCATCCTCTGCTCCTCGTGATATAATTCCTCGTGATATAACGTGAGAAATCAATGATGACTATGGTCTGTTAGCTGTGTTTAAAGATTCCTGTAatataaaaatgtgaattttcCTCATGTTTGCCTCCAATTTTGTGGCTGAATTGCACTTGTTCATGCAGTTgttgtgatataaacacacacacacacacacattttgggttgatttttttaaagttttgattgTAAGATGCCATTTTTTATTTCCATGTTGCTTTACATCTCTAGAAAGTTGTATTTGCACATTGTCCTGTTATATTTAGATGTGATTATCcatatatttgatattttgtgATGTTATCTTTGTGTCTGTGCAAGTCTCTTGCATGACCGGTTGATTTCTGCTTGTTTGAATGCTCCGGCTTGTGATTTGTCATGAAATTATCATTTAAACGTCGTTCCTATTTAAACGTGTAACGGGTGTTCATGCTCAATGTGttcttatatatgtatataggtgaaataataaatatagcctGTACCGGTCA
>TCONS_00011336
ATGGCTTCAACCATGATTCCGTACACTGTCAACATTAAACTGGCCGCACGGACACTGACCGGAACCCTTAATTTGCAGAACAAGACAGCAGTGGACTGggGTTGGCAGGGTCTGATCGCTCAAGGCTGTCACTCTAGCATCCTCATCATTGATCCAAACACAGCTCAGACCATTCAGGTCCTGGAGAGACACAAAGCCAATGTAGTCAAGGTGAAATGGTCCAGAGAAAACTACCACCACAGTCTGAGCTCACCCTACTCCCTGCGTCTGGCATCTGCAGATGCGGCAGGGAAGATCATTGTGTGGGATGTGGTGAGCGGTATGGCACACTGTGAGATCCAGGAGCACAGCAAACCCATTCAGGATATGGACTGGTTGTGGGCTCAGGATGCTTCTCGTGATCTTCTTCTGGCCGTTCACCCTCCCAACTATATTGTTCTGTGGAACGGAGACACGGGCACCAAACTGTGGAAGAAGAGCTACGCTGAGAACATCCTGTCCTTCTCATTTGACCCCTTTGAGCCCTCTAATCTGGCATTGTTGACCAGCGAGGGTATAGTGTTCATCACAGATTTCTCACACTCTAAGCCGCCGGGCAGCGGAGGCAAGAAGGTTTACATCGCCAGTCCTCACTCCAGCCCAGCCCATAGCAAACCTGCTGCGGCTCAACCCACCGGTGCCAAAAAAGCCCTCAACAAGGTCAAAGTGCTCATCACCAATGAGAAACCCACGGCTGAAGCAGTGACTCTTAATGACTGCCTCCAGCTCTCATATCTGCCATCTAAGAGAAACCACATGCTGCTGTTGTACCCAAGAGAGATCCTCATCCTGGACCTGGAGCTCAGTCAGACTGTTGGTGTGGTGGCTATTGAGCGCTCCGGCGTGCCCTTCATACAGgtgATCCCCTGTGCTCAGAGAGATGCGCTTTACTGCCTCCATGAGAACGGTTGCATCACATTGCGTGTGTGTCGCTCCACAACACCTTCACCTAATGAAACAGTGACTGATCCAGAGCAGAATTCCCAAGAGTTGGTTTACGATCTCCGTTCCCAGTGTGATGCCATCCGTGTGACTAAGACCGTGCGTCCCTATCGAGTGGTCATCTGTCCTGTCAATGAGAACAAGGCCGTGCTGGTGGTCAGTGATGGAAGGGTGATGCTGTGGGAACTCAAGGCTCATGCCAGCAAATCTTCATCCAACCTGAGCTCCGGCTTGCCTCCTTTGTATTCTGCTGTGAATTTCTGCGGGACGCCTTTACGTCAGAATCAGAAATGCATCCCGGATCTTTCTCTGAATTCAATGATTGGTCACAGTCTGATTCCTGGAGTGGACTCTCCGCGACCTCTGGCTGACCAGAAAGAAGTACATCTGAAGTTCCTGTTGACAGGTCTGCTCTCTGGCCTGCCTTTGCCTCCATTCTCCCTGAGGATGTGCCCTCCGCTCACCACCAAAAACATTAACCACTACCAGCCCTTACTGGCTGTGGgTACAAGCAATGGCTCTGTGCTGGTGTACAACTTGACCAGTGGCCTCCTGCACAAAGAGCTCAGTGTCCATTCCTGCGAGGTCAGAGGAATTGAATGGATTAGTTTGACTAGTTTTCTGTCCTTCGCCACCTCCGTCCCCAACAACCTTGGCCTCGTGAGGAATGAGCTGCAGCATGTGGATTTACGCACAGGGCGGTGCTTTGCGTTTCGCGGCGAGCGTGGCAACGATGAACCAGCCATTGAAATGATTAAAGTGTCACATCTGAAGCAGTACCTGGTGGTGGTGTTCAGAGATAAGCCTCTGGAACTCTGGGATGTCCGAACAGGAACCCTGCTGCGTGAGATGGCCAAGAACTTCCCTACGGTCACTGCTCTGGAGTGGTCTCCTTCACACAACCTCAAAAGCCTGAAGAAGAAGCAGCTTGCGGCGCGAGAAGCCATGGCCAGACAGACCACGCTCGCGGATGCAGAACAGAGCAGTGTGGAGTCCTCCGTCATCAGtctgttgCAGGATGCGGAGAGTAAGTCTGAAAGCAGTCAGGGCATATCGGCCCGAGAACACTTTGTGTTTACTGACACCGACGGTCAGGTCTATCACATCACTGTCGAAGGAAACACTGTGAAGGACGGCGCTCGTATTCCTCCTGATGGCAGTATGGGAAGCATTGCCTGTATTGCATGGAAAGGAGACACTCTAGTTCTGGGAGATGTTGATGGAAACCTCAACTTTTGGGACCTGAAGGCCCGTCTTTCAagAGGTGTTCCTACACACCGCGGCTGGGTGAAGAAGATACGCTTTGCTCCTGGAAAAGGCAACCAGAAACTCTTGGTGATGTACACAGATGGAGCTGAGGTCTGGGACACTAAAGAGGTGCAGATGGTGAGCAGCATCAGAGTGGGTCGCAATGTTAACTACAGAATCCTGGATATCGACTGGTGCACGTCTGATAAAGTGGTGCTGGCGTCAGATGACGGCTGTGTCAGAGTGCTGGAGATGGCCATGAAGTCCGCCAGTTACAGGATGGATGAGCAGGACCTGACAGATCCAGTGTGGTGTCCGTATCTCCTCCTGCCGCGTGCTGCACTCACACTAAAGGCTTTCCTGCTGCTGCAGCCGTGGATGGACACTTTCACCATGGACATCACTCAAGTAGACTACAAAGAGAAAGATGAAATCAAGGGACTGATCCAGGAACAGCTCAACTCTCTCTCCAATGACATCAAAAGTGTCCTGCAGGATCCCAATCTGAGCCTGCTGCAGCGCTGCCTGCTTGTGTCTCGGCTGTTCGGTGATGAATCAGACCTTCAGTTCTGGACGGTGGCTTCTCATTACATCCAGGCGTTTGCTCAGAGCGCTCAGTCCAACGAATCCGTCCCAGAAGGCCAAGCGGCAGCCAGTCATCTGGACATCTGCCATGACATCCTCTGTGAAAGCTCCTTCTTCCAGGGCTTTCAGCTGGAGCGTGTTCGTCTGCAGGAAGTGAAGCGGTCCAGCTATGAACACACCAAAAAGTGTGCAGACCAGCTCCTCCTGCTGGGACAGACCGACCGTGCGGTGCAGTTGCTTTTGGAGACGAGCGCTGACAACTCCAGCTATTACTGTGACTCTCTGAAAGCCTGTCTGGTGACCACCATCACCTCCTCCGGCCCGTCCCAGAGCACCATTAAACTGGTGGCCACGAACATGATCGCCAATGGAAAGCTGGCAGAGGGTGTACAGTTGCTCTGTCTGATTGACAAAGCAGCAGATGCATGTCGCTATCTGCAGACGTATGGAGAATGGACCCGCGCCGCCTGGCTGGCCAAGgtgcgTCTGAATGCAGCGGAGGGTTCAGATGTGCTGAAGCGCTGGGCAGAGCATCTGTGTTCTCCTCAGGTCAATCAGAAGTCAAAGGCCATGCTGGTGCTGCTCTCACTGGGCTGCTTTCAGAAAGTGGGCGAGATGCTCCACAgCATGAGATATTTCGACCGCGCCGCGCTCTTTATCGAAGCCTGTCTGAAATATGGAGTGATGGAGACCAACGATGACATTAATAAGCTGGTCGGAGCCGCGTTTGTGGACTACGCCAAGCTGCTTCGCTCCATCGGACTGAAACAGGGCGCTGTTCACTGGGCGTCCCGAGCCGGAGAGGCTGGAAAGCAGCTTTTGGAGGATCTTTCCCAAACTGAGGGAACGGGCACTGAATCCAGCCCAGCCGACGACACGGACAACAGTCTGGTGAATATTGAATGA

Function

symbol description
wdr11 Acts upstream of or within cilium assembly and neural crest cell migration. Located in axoneme. Is expressed in olfactory bulb. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 14 with or without anosmia. Orthologous to human WDR11 (WD repeat domain 11).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0007507 heart development biological_process
GO:0035264 multicellular organism growth biological_process
GO:0001755 neural crest cell migration biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0060271 cilium assembly biological_process
GO:0099041 vesicle tethering to Golgi biological_process
GO:0060322 head development biological_process
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005930 axoneme cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-081107-28 Acts upstream of or within cilium assembly and neural crest cell migration. Located in axoneme. Is expressed in olfactory bulb. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 14 with or without anosmia. Orthologous to human WDR11 (WD repeat domain 11).

Ensembl:

ensembl_id ENSDARG00000075245

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011335 False 5853 mRNA 0.46 29 2732951 2828218
TCONS_00011336 True 3720 mRNA 0.53 29 2733086 2826220

Neighbor

gene id symbol gene type direction distance location
XLOC_005715 NA coding upstream 56615 2671432 ~ 2676336 (+)
XLOC_005714 plpp4 coding upstream 67838 2538636 ~ 2665113 (+)
XLOC_005713 lhb coding upstream 206918 2523032 ~ 2526033 (+)
XLOC_005712 arfgef3 coding upstream 234630 2442841 ~ 2498321 (+)
XLOC_005711 elovl5 coding upstream 315542 2394264 ~ 2417409 (+)
XLOC_005717 si:ch211-233m11.1 coding downstream 2356 2830574 ~ 2849857 (+)
XLOC_005718 BX571701.4 coding downstream 4874 2833092 ~ 2833207 (+)
XLOC_005719 XPO5 coding downstream 33047 2861265 ~ 2892011 (+)
XLOC_005720 CABZ01087629.1 coding downstream 66318 2894536 ~ 2901707 (+)
XLOC_005721 wu:fj16a03 coding downstream 80546 2908764 ~ 2913899 (+)
XLOC_005710 CR376766.1 non-coding upstream 346418 2386413 ~ 2386533 (+)
XLOC_005708 CR376766.2 non-coding upstream 379956 2352289 ~ 2352995 (+)
XLOC_005706 NA non-coding upstream 579935 2149770 ~ 2153016 (+)
XLOC_005705 NA non-coding upstream 699908 1983311 ~ 2033043 (+)
XLOC_005722 NA non-coding downstream 95702 2923920 ~ 2928455 (+)
XLOC_005723 NA non-coding downstream 115063 2943281 ~ 2944990 (+)
XLOC_005725 AL935294.2 non-coding downstream 431325 3259543 ~ 3260961 (+)
XLOC_005726 NA non-coding downstream 791048 3619266 ~ 3620828 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002732 wdr11,LOC107664693,LOC107741118,LOC107750394 coding CM030139.1 CM030139.1 485836 ~ 513387 (-)