XLOC_005711 (elovl5)


Basic Information

Item Value
gene id XLOC_005711
gene name elovl5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 2394264 ~ 2417409 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011321
CTTGCGTTCTGTTGAGGAGGAATCGATACATTCGCGTTCTAAATCAACTTCAAACATGAGTACAGTTGCATGACGTCATCATAAATGTCAACAAACTGCTACATCATTAAAAGTTTGTTGCATCTCCTCAGCGCCTCCTGGTAAAAATCGAATGAGGTTGAAGATGGAGACGTTTAGTCACAGAGTCAACTCTTATATTGACTCCTGGATGGGACCCAGAGATCTCAGGGTCACAGGATGGTTTCTGCTGGACGACTACATTCCCACCTTTATCTTCACTGTCATGTACCTGCTGATTGTGTGGATGGGACCGAAATACATGAAGAACAGACAGGCGTACTCTTGCAGAGCCCTGCTGGTGCCGTATAACCTGTGTCTGACGCTGCTGTCTCTCTATATGTTCTATGAGCTGGTCATGTCTGTGTATCAAGGTGGGTACAACTTCTTCTGCCAGAACACCCACAGTGGAGGAGACGCCGACAACAGGATGATGAATGTCCTGTGGTGGTATTACTTCTCCAAGCTCATCGAGTTCATGG
>TCONS_00011322
AGATGAAGGTGGACTACACACACTCATGACGCTCATTAGTTCAGCAgcttcacactcaaacacacacatcctCCAAGGACAGGACGAAGCCCTGAgcaacacacactcgcacacttcTAAAGACTAAAGGACTTTCCCTGACAGTCTGAATTCGCTCCGACTTGTGAAAACAGCTGAAGTAATCTTGGTGTTATTCCTCTTGAAGGTTGAAGATGGAGACGTTTAGTCACAGAGTCAACTCTTATATTGACTCCTGGATGGGACCCAGAGATCTCAGGGTCACAGGATGGTTTCTGCTGGACGACTACATTCCCACCTTTATCTTCACTGTCATGTACCTGCTGATTGTGTGGATGGGACCGAAATACATGAAGAACAGACAGGCGTACTCTTGCAGAGCCCTGCTGGTGCCGTATAACCTGTGTCTGACGCTGCTGTCTCTCTATATGTTCTATGAGCTGGTCATGTCTGTGTATCAAGGTGGGTACAACTTCTTCTGCCAGAACACCCACAGTGGAGGAGACGCCGACAACAGGATGATGAATGTCCTGTGGTGGTATTACTTCTCCAAGCTCATCGAGTTCATGGACACCTTCTTCTTCATCCTGAGGAAAAACAACCACCAGATCACGTTCCTGCACGTGTATCATCACGCCACCATGCTCAACATCTGGTGGTTCGTCATGAACTGGGTGCCGTGTGGACACTCGTATTTTGGTGCAACCTTTAACAGCTTCATCCATGTGCTGATGTACTCGTATTACGGCCTGTCTGCGGTTCCAGCTTTGCGGCCGTATCTGTGGTGGAAGAAGTACATCACTCAAGGACAGCTG
>TCONS_00011323
AGATGAAGGTGGACTACACACACTCATGACGCTCATTAGTTCAGCAgcttcacactcaaacacacacatcctCCAAGGACAGGACGAAGCCCTGAgcaacacacactcgcacacttcTAAAGACTAAAGGTTGAAGATGGAGACGTTTAGTCACAGAGTCAACTCTTATATTGACTCCTGGATGGGACCCAGAGATCTCAGGGTCACAGGATGGTTTCTGCTGGACGACTACATTCCCACCTTTATCTTCACTGTCATGTACCTGCTGATTGTGTGGATGGGACCGAAATACATGAAGAACAGACAGGCGTACTCTTGCAGAGCCCTGCTGGTGCCGTATAACCTGTGTCTGACGCTGCTGTCTCTCTATATGTTCTATGAGCTGGTCATGTCTGTGTATCAAGGTGGGTACAACTTCTTCTGCCAGAACACCCACAGTGGAGGAGACGCCGACAACAGGATGATGAATGTCCTGTGGTGGTATTACTTCTCCAAGCTCATCGAGTTCATGGACACCTTCTTCTTCATCCTGAGGAAAAACAACCACCAGATCACGTTCCTGCACGTGTATCATCACGCCACCATGCTCAACATCTGGTGGTTCGTCATGAACTGGGTGCCGTGTGGACACTCGTATTTTGGTGCAACCTTTAACAGCTTCATCCATGTGCTGATGTACTCGTATTACGGCCTGTCTGCGGTTCCAGCTTTGCGGCCGTATCTGTGGTGGAAGAAGTACATCACTCAAGGACAGCTGGTCCAGTTTGTCCTGACCATGTTCCAGACGTCTTGTGCTGTGGTTTGGCCGTGTGGTTTCCCAATGGGCTGGCTGTATTTCCAAATCTCTTACATGGTCACGCTCATCCTGCTCTTCTCAAACTTCTACATTCAGACCTATAAGAAACGTTCGGGATCCAGGAAAAGCGATTACCCCAATGGATCAGTAAACGGCCACACTAATGGAGTGATGTCCAGCGAGAAGATTAAACACAGAAAAGCACGAGCAGATTGATGGCAGTTCATCCATTATTGATACGCACACATTAGATCCATGTCCACTGACCACGCTAAAAACATTTCATATTTCCGAGAGAGAGAGACTCCTTACACGTTTGCACACTGCAACCTCATTTTATTCATATTGAATCCAAAACAAAGTGCATAAGAGAGCTACGATTAGAGTCCAGGTTAGCTTACATCTAGAATGCAGAGTTGAAgccaaaatgattcgccctcctgtgaattttatttcctttttcaaatgtttctcaaacgatgttgaacagattcaggaatttttttacagtatttcctataatatttgttcttctggagaaagtcttatttgttttatttcggctagaaggaaagcagtttttaattattttaaacccattttaaggtcaatattattcgcccccttaagcagtatttgttttggattgccttcaaaacaaaccactgttatacaatgacttgcctaattaccataactttaccctaattcgtttaaatgtcactttaaagggtcatgacacctcCCACTTTCGGTTCGAATCTACTTCAGAatatttttcaaaagatgcatgataatTGGGGGTGGAGCTCCGCAAGCAAAGGACAGgaatgggcgtggccagcagagcaggggagaagcaGGGGAGTGAaaaactgttgtcagtcggctcacaaaatgagacacaaaccgtgaggagacgcatgagtttatagtttacaaagttaaaatgcaaagaaataaacagtgatttaatgccagggttcaacgctaacgccccattcacacgaggcttcagcgtcaacgcttgactgaaggcgtgtctgaagttggggctgaagcgatcgtcataaagtgtcagccaatgaaattcagtcagcaataggccactgtctgagctggtgtatttgcatacagcgatctgattggctgacgcttctgttggcgattgaaaagttgagctagtcccaacttctgcagcgagcaacgcctctgaagcggcgctgatggatccacaatgcagttcggcaacgcctgacgtcacccattcaaagtgaatgggaagcgttgacgctgacgccccgtgtgaatggggcgtaaggattttttctactggtccaatcgggccaatggttcagatttttacttgccctgccaaaattttcactggccccattaaaaaataaaaaa
>TCONS_00011324
GCCCTGAgcaacacacactcgcacacttcTAAAGACTAAAGGTTGAAGATGGAGACGTTTAGTCACAGAGTCAACTCTTATATTGACTCCTGGATGGGACCCAGAGATCTCAGGGTCACAGGATGGTTTCTGCTGGACGACTACATTCCCACCTTTATCTTCACTGTCATGTACCTGCTGATTGTGTGGATGGGACCGAAATACATGAAGAACAGACAGGCGTACTCTTGCAGAGCCCTGCTGGTGCCGTATAACCTGTGTCTGACGCTGCTGTCTCTCTATATGTTCTATGAGCTGGTCATGTCTGTGTATCAAGGTGGGTACAACTTCTTCTGCCAGAACACCCACAGTGGAGGAGACGCCGACAACAGGGTAAAACAACAAACTGAGTTTTCCACTGAATGAGACTTGAACATTCTAAGTCTCAGCTTAACCCTTTTATCACAATCCCCGGAAAAGACACAATATTCCCTGCTGGGCTCTTACATAAGTGTCCTGTTGACCCGGCTGCTCTGACACgagtattcagaggacacataaCACAGCAGAGGTTGCCTTAGACTTCTAATATTGCATTTTTGTAATATACGTGATGAAATGATTTCTTGCATGTGCTTATGCTGTCCTCAGATGATGAATGTCCTGTGGTGGTATTACTTCTCCAAGCTCATCGAGTT

Function

symbol description
elovl5 Enables fatty acid elongase activity. Acts upstream of or within fatty acid elongation, unsaturated fatty acid; long-chain fatty acid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to be integral component of plasma membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including blood; digestive system; fat cell; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 38. Orthologous to human ELOVL5 (ELOVL fatty acid elongase 5).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0006636 unsaturated fatty acid biosynthetic process biological_process
GO:0030148 sphingolipid biosynthetic process biological_process
GO:0042759 long-chain fatty acid biosynthetic process biological_process
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0030497 fatty acid elongation biological_process
GO:0035338 long-chain fatty-acyl-CoA biosynthetic process biological_process
GO:0019367 fatty acid elongation, saturated fatty acid biological_process
GO:0019368 fatty acid elongation, unsaturated fatty acid biological_process
GO:0034625 fatty acid elongation, monounsaturated fatty acid biological_process
GO:0034626 fatty acid elongation, polyunsaturated fatty acid biological_process
GO:0042995 cell projection cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0030425 dendrite cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0102756 very-long-chain 3-ketoacyl-CoA synthase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0009922 fatty acid elongase activity molecular_function
GO:0102336 3-oxo-arachidoyl-CoA synthase activity molecular_function
GO:0102337 3-oxo-cerotoyl-CoA synthase activity molecular_function
GO:0102338 3-oxo-lignoceronyl-CoA synthase activity molecular_function

KEGG:

id description
ko00062 Fatty acid elongation
ko01040 Biosynthesis of unsaturated fatty acids
ko01004 Lipid biosynthesis proteins

ZFIN:

id description
ZDB-GENE-040407-2 Enables fatty acid elongase activity. Acts upstream of or within fatty acid elongation, unsaturated fatty acid; long-chain fatty acid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to be integral component of plasma membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including blood; digestive system; fat cell; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 38. Orthologous to human ELOVL5 (ELOVL fatty acid elongase 5).

Ensembl:

ensembl_id ENSDARG00000004979

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011321 False 539 mRNA 0.46 5 2394264 2410910
TCONS_00011322 False 833 mRNA 0.49 6 2394534 2411851
TCONS_00011323 False 2206 mRNA 0.45 8 2394534 2417409
TCONS_00011324 True 677 lncRNA 0.46 4 2394622 2410905

Neighbor

gene id symbol gene type direction distance location
XLOC_005709 gclc coding upstream 1600 2357637 ~ 2392664 (+)
XLOC_005710 CR376766.1 coding upstream 7731 2386413 ~ 2386533 (+)
XLOC_005708 CR376766.2 coding upstream 41269 2352289 ~ 2352995 (+)
XLOC_005707 klhl31 coding upstream 43502 2338761 ~ 2350762 (+)
XLOC_005706 NA coding upstream 241248 2149770 ~ 2153016 (+)
XLOC_005712 arfgef3 coding downstream 25432 2442841 ~ 2498321 (+)
XLOC_005713 lhb coding downstream 105623 2523032 ~ 2526033 (+)
XLOC_005714 plpp4 coding downstream 121227 2538636 ~ 2665113 (+)
XLOC_005715 NA coding downstream 254023 2671432 ~ 2676336 (+)
XLOC_005716 wdr11 coding downstream 315542 2732951 ~ 2828218 (+)
XLOC_005705 NA non-coding upstream 361221 1983311 ~ 2033043 (+)
XLOC_005701 CABZ01044297.1 non-coding upstream 628642 1765507 ~ 1765622 (+)
XLOC_005718 BX571701.4 non-coding downstream 415683 2833092 ~ 2833207 (+)
XLOC_005722 NA non-coding downstream 506511 2923920 ~ 2928455 (+)
XLOC_005723 NA non-coding downstream 525872 2943281 ~ 2944990 (+)
XLOC_005725 AL935294.2 non-coding downstream 842134 3259543 ~ 3260961 (+)

Expression


Co-expression Network