XLOC_005723


Basic Information

Item Value
gene id XLOC_005723
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 2943281 ~ 2944990 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013376
tgattaattgatttattgatttatttatttattgatttatttattttttcattcattttcttttctgcttagtcccttttattaatctggagtcgtcacagtggaatgaaccgccaacttatccagcacatttttacgcagcggatgcccttccagccgcaacccatcaatgggaaacatccacacacacccaattcacctgtaccgcatgtctttggactgtgggggaaaccgaagaacccggaagaaacccacgggaacgcagggagaacatgcaaactccacacagaaatgccaattgacccagccgaggcttaaaccagcgaccttcttgctgtgaggcgacagcactacctactgcgccactgcatcgcccttatttatttatttaaagaagaaTAGCATATAACATATTACCGAGGAAAACAGTAGGCCTACAGATGTAGATTATATTCCTCATGGCAAAGTGACTTTAGCTGAATTACACAAACTCATGAGGGCACACATGTGCTGCAGCAGGTCAGATGTGAAGTTCAGCTCTTTTATTTGTTACCTTTACCGTAGTGTAGTAAATGTCACCCCCGTGTATTTCTCTACTGACGCGAAACGCTATTCCTAACAGAATGGCAACTGTTAACTGTGCTTTTTGGTGGCATGTTCATGGTGATGAAATGAGAAATAAACAAAGATTTCCTTTCGGGGCCTGTGCAAAATCTTGATTTAAACTCATTCTTTTTCTAACTTTCTTTTAGAAGAAAgcaagaaaataaatagttttatcaAACATAGCTAGTCAAGTTTCTTTATTCTCCTGTCTTTACTTTGAGCAGATTTTGATTAGTTTTGGTTTGAGCACATTCAGCAGAGCAGAGCAGATCAGCATGATCAGTCAACGCCACAGTGCTTTATCTGAGGAAATGCAGGTGATGATTAAAAACAATGGTAACAAATCAAATTCTGACTTTTTATTCTTGCAATTGCAGGTTTATTTCACACAATTGcgaatttattttcaaaatagtgAGATATGAAGTCAAGATTCCGACTTTACAACATgcaattgtgctttttttttctcagaacttTGACTTTATCTCACTCAATTGTGGCTTTATTTTTCTGAATTCTGattttatattacataaaatTGTGACTTTCTTAAAATTCTGACCTTATTTCTAAGAATTGTGAGT

Function

GO:

id name namespace
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0043235 receptor complex cellular_component
GO:0005253 anion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013376 True 1193 lncRNA 0.38 2 2943281 2944990

Neighbor

gene id symbol gene type direction distance location
XLOC_005722 NA coding upstream 14826 2923920 ~ 2928455 (+)
XLOC_005721 wu:fj16a03 coding upstream 29382 2908764 ~ 2913899 (+)
XLOC_005720 CABZ01087629.1 coding upstream 41574 2894536 ~ 2901707 (+)
XLOC_005719 XPO5 coding upstream 51270 2861265 ~ 2892011 (+)
XLOC_005717 si:ch211-233m11.1 coding upstream 93424 2830574 ~ 2849857 (+)
XLOC_005724 prph2b coding downstream 307960 3252950 ~ 3258772 (+)
XLOC_005725 AL935294.2 coding downstream 314553 3259543 ~ 3260961 (+)
XLOC_005726 NA coding downstream 674276 3619266 ~ 3620828 (+)
XLOC_005727 qkib coding downstream 722240 3667230 ~ 3843692 (+)
XLOC_005728 timm23b coding downstream 935892 3880882 ~ 3926179 (+)
XLOC_005718 BX571701.4 non-coding upstream 110074 2833092 ~ 2833207 (+)
XLOC_005715 NA non-coding upstream 266945 2671432 ~ 2676336 (+)
XLOC_005710 CR376766.1 non-coding upstream 556748 2386413 ~ 2386533 (+)
XLOC_005708 CR376766.2 non-coding upstream 590286 2352289 ~ 2352995 (+)
XLOC_005729 CU019624.1 non-coding downstream 950373 3895363 ~ 3907897 (+)
XLOC_005732 NA non-coding downstream 1034937 3979927 ~ 3985680 (+)
XLOC_005733 NA non-coding downstream 1188753 4133743 ~ 4134113 (+)

Expression


Co-expression Network