XLOC_005722


Basic Information

Item Value
gene id XLOC_005722
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 2923920 ~ 2928455 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013541
ggaatggttggggATATTagtgtcctgtttgtggcacattagtatatgagGGGGCAAAATTTTCAAGATGGGTAGTGACCATGACcatgaccatggtggccattttgaagtcagccatcttggatacaactgttgttgtttttaataggaagagggtcatgtgacacatcaaacttattgggatttcacaagaaaaacaatggtgtgcttggttttaacgtgaCTTTATTcgttcatgagttatttacaagtttctgatcacttttaaaatgtgttcagtgtgctgcccattgtattggattgtcaatgcaaccctcttctcccactcttcacacactgatagcaacaccgcaggagaaatgccagcacaggcttccaatatctgtagtttcaggtgctgcacatcttgtgtcttcacaccatagacaactgCCTTCAGATGACCTAAAAGATAAAACTCAAAGGGGTCAGATCAGGAGACCTTggggggccattcaactggcccacgacgACCAATTCACTTTTCAGGAcaactgttcatctaggaatgctcgggCCTGACACCCTTAATGTGTTGGTGCACCATCTTGCAGGAAAAACTCAGGGGACATGGCAgattcagtgcataaagagggaaacacatcatcatggagCAATGTCAAATGTCCAGTGTCCTTGAGGattccattgatgaagaatggccccactatcttGGCTGTCTTTGGTGTGAAGacacaagatgtgcagcacctgaaatcacagatactggaagcctgtgctggcattttctcctgcggtgttgctatcagtgtgtgatgagtgggagaagagggttgcattgacaatccaacacaatggccAGCATATTGAACatattttataagtggtcagaaacttgtaaataactcaagaaagaataaagttacgttaaaaccaagcacaccattgtttttcttgtgaaattcccaataagtttgatgtgtcacatgaccctcttcgtataaaaaaaaacaaaaattggatccaagatggctgacttcaaaatggctaccatggtcaccacccatcttgaaaagtttgcctcttcacatatactaatgtgccacaattAGGACAATAagatcaccaaccattcccattttattaaggtgtatccatataaatggcccaccctgtgtaTGTATGACCGGTTTTCAACAAAAACATTGCGAAATCATGATACTTTACTTTCTGATATTATTGTGTAAGCTTTTCCAAAAAGGAGAGACAGAAAAAACTCTACCTTTCTCTCTTCCTTTGACTTTTTCCATCTAGACCCTGAGAAGATGTGAAGGAGAGAGGAATGAAAGAAGAACGACTggctcatatacacacacactcacgcacaagCACTCACATTTAAGACTCGTTTAATCTTTCCTTTCTCGCATGATAAAAAACAAGAACATCTCAGTCCAATGAACAAAATGACAAGAAAGACAGTCCCAAAATTAAACCTAAAAACAATTCGGTCTCAGTGAGAAAAGAGTCATTTGGATGAGAGTTTAAAACGGATGGTATGAAAATCTCCAGTGTAAAAAAAGGAGATGTAAGAGTGGCGCGGTATCTTAGACAGCTGGGTGAGACTGGAACTACTATATATCGGCTGTTTATCACCATGCAGACCTGTTTTTGTTGCAGGTCAGGCTTGTGTGAGAATGTGTTCGCTGCGGATATACTGAATGTCGTGCACAGCTGTACATGGCTATTGTTCAGTAAATTCAAGGCAAAAATTATGGTTGAAATTCAAGGTATCCATGACCATGATGACCAGCAGAAGCAGCCTGGAATATTGAGGTCCTTGAGTCCAACGTATGAACCAGGAACACCTGCCTGGCATCACCAGATTTGCACGTCCTATAGTTTTTGGCTCAGGGACAGATGCTATGCAAGCAGGCAAATTAGCTTCACACCCAGTTCCTCCACCAATGTTCACAGAAAGTGAGAGAGAACACAAATGAACATTCAAACGTGATTTAAAgcttagttcacctaaaaatgaacatttactcaacttcatgtcattccaaacctgtttaagttgcCTTCTGCaaaacagaagaagatattttaaagaacacAAGTGAAATTGGAGCAAAACTGTCAAAAGGTCTTTGAAAAGTGCTTAAAAGATCCttgaaactattttaaaaaaacttCAAAAGGTACTCGAAAGATCCTCAAAACATCTTCTCTTTTAAAGAACCTAAAGACATCCTCAAATATTTGAATAAACCCTCAAATGATCTTTGAAATGTAttcaaaagatcctcaaaacaTCTTTGAAAGAACCTcaagacatattttttttttttttataaatccgCAACGGATCTTTGTAACATATTTGAGAGACTCTTAAGAGACTCTCAAAAGAGCCTCAAAAGATCCTTGAAAGATTCCTTAAAGAGCCTCGCAGCATCTTTGTGAGATTCTCAAAAGAGCCTCGAAAGATTCTTAAAAGAGCCTCGAAACATCTTTGAAAAATTCTCAAAAGAGCCTCTAAACATCTTTAAGAGATTCTATAAAGAGCCTCGAAAGATCCTTGAAAGATTCCTAAAAGAGCCTTGAAAGATCTTTGAAAGATTCTCAAGAGCCTCGAAAGATTCTTAAAAGAGCCTCGAAAGATTCTTAAAAAAGCCTCGAAAGATTCTTAAAAAAGCCTCGAAAGATCTTTGAATAATTCTCAAAAGAGCCTCTAAACATCTTCTAAAAACCCTCAAAAGAGCCTCGAAACATCTTTGAGAAATTCTCAAAAGAGCCTCGAAACATCTTTGAAAGATTCTCAAAATTGCCTCGAAAGATCCTTGAAAGATTCCTAAAAGAGCCTTGAAAGATCTTTGAAAGATTCTCAAAAGAGACTCGAAAGATTCTTTAAAAAGCCTCGAAAGATCTTTGAATAATTCTCAAAAGAGCctctaaacatcttttaaaaacccTCAAAAGAGCCCTAAAACATCTTTGAGAGATTCTCAAAAGAGCCTTGAAAGATTCTTGAAACATTTTCGAAAGATCCTCAAGACATCCACAAAAGATCTTTGAAACAGCTTTGAAAAATATGTGAAGCTACCTTAAAAGACCCTCGAAACCTCTTCGAAAGATCCTCAAAGGTTTCTCAAACATttcaaaagatcctcaaaagatCTTTTCTATTATGCACATAAGAAGGACAGTCAAACAGGTCTGGAACGATATGAGGACGAGCCAATAAAGACCAAAAGATTTATAGTAAACCTCATAAGTGAAGTACAGATttggtaattaattaattaatttcaccCTTTAAGTATAGAAAAAAGCTTGTGttgattttgtttcatttgtgtgTTGGCCTGTGTGAACTCAGGCAGGTAAACTGATTTAATTCCACCTTTAACATAATCAGTTACCGAATCGCGTATGAATGTCTgtattagtgtttgtgtgtgtgtgtgtcagtgtaaaTTTACTGGTTTTAACTACAAATTCCAAATCTCTCACCATCCAAGCCAAACCAATGCCTCCACGACCACagaacaaaacattaacaaaactaagacacaaatgaaaagaaaatctcGAAAGGATAAAAAAACCGAGGAGACTCTGCTGCTGTAATCCCACAGGAAGGCTGCAGTGTCATGCTGGTGCCTCTGGGCGCGCTATTGAGCAAGAGAGAAAGAGGAAGGGCTAGACACCTTATAAGGGCGGGTTAAAGGGTGTGCCCTCGTCACTGGGCGTGGCTGTATCATCACTAGGCTCTAGGCTGTCCTTTGGGCTCAGAGTGCTGTCGGAAGGGGGAGTGTTGGGGATGCTGGGTACCGATGGCAGCCCCCGAGGGGTGGAGTTGTTCAGAAAGGAGTCGCCGAAGCCCAGACTGGAGTCGCTGTGCACCAATGAAGAGGTTTTTTCCACTAGACGCCACTGCATGATGCTCATGTCCTTGCCACCCGTGGAAACCAGGTGACTATCGTTGTGCATGAAGCTCACATTGGTCACGTGACTGCTGTGGGCGCTGTACTTGTGGCTTGGGGCCTGCAATTAAACAACAAAACCAAGGAAACTTCAGATGAATGCATTCATCAATCTTACCCAATTGACCCTTCGCAAAGCTCCTTCCCCTTCTCACTGTCTGACAAGCTTTCAGTATCATCCTATAACTCTGGGCACTCCTCAGGGAAATAGTGAATCATTTCTATACAAATTACATATTCAAATTCAATTAAAGGTCGGTGAAATTAAAATCCATTTTTTATGTTAGCTTTAGtctattcattttaaagatacctattagctagtgtgctccaaaatagTATTTGAAGATATACACCTGATTTAAACATCCAacgcttg
>TCONS_00013542
aaagaataaagttacgttaaaaccaagcacaccattgtttttcttgtgaaattcccaataagtttgatgtgtcacatgaccctcttcgtataaaaaaaaacaaaaattggatccaagatggctgacttcaaaatggctaccatggtcaccacccatcttgaaaagtttgcctcttcacatatactaatgtgccacaattAGGACAATAagatcaccaaccattcccattttattaaggtgtatccatataaatggcccaccctgtgtaTGTATGACCGGTTTTCAACAAAAACATTGCGAAATCATGATACTTTACTTTCTGATATTATTGTGTAAGCTTTTCCAAAAAGGAGAGACAGAAAAAACTCTACCTTTCTCTCTTCCTTTGACTTTTTCCATCTAGACCCTGAGAAGATGTGAAGGAGAGAGGAATGAAAGAAGAACGACTggctcatatacacacacactcacgcacaagCACTCACATTTAAGACTCGTTTAATCTTTCCTTTCTCGCATGATAAAAAACAAGAACATCTCAGTCCAATGAACAAAATGACAAGAAAGACAGTCCCAAAATTAAACCTAAAAACAATTCGGTCTCAGTGAGAAAAGAGTCATTTGGATGAGAGTTTAAAACGGATGGTATGAAAATCTCCAGTGTAAAAAAAGGAGATGTAAGAGTGGCGCGGTATCTTAGACAGCTGGGTGAGACTGGAACTACTATATATCGGCTGTTTATCACCATGCAGACCTGTTTTTGTTGCAGGTCAGGCTTGTGTGAGAATGTGTTCGCTGCGGATATACTGAATGTCGTGCACAGCTGTACATGGCTATTGTTCAGTAAATTCAAGGCAAAAATTATGGTTGAAATTCAAGGTATCCATGACCATGATGACCAGCAGAAGCAGCCTGGAATATTGAGGTCCTTGAGTCCAACGTATGAACCAGGAACACCTGCCTGGCATCACCAGATTTGCACGTCCTATAGTTTTTGGCTCAGGGACAGATGCTATGCAAGCAGGCAAATTAGCTTCACACCCAGTTCCTCCACCAATGTTCACAGAAAGTGAGAGAGAACACAAATGAACATTCAAACGTGATTTAAAgcttagttcacctaaaaatgaacatttactcaacttcatgtcattccaaacctgtttaagttgcCTTCTGCaaaacagaagaagatattttaaagaacacAAGTGAAATTGGAGCAAAACTGTCAAAAGGTCTTTGAAAAGTGCTTAAAAGATCCttgaaactattttaaaaaaacttCAAAAGGTACTCGAAAGATCCTCAAAACATCTTCTCTTTTAAAGAACCTAAAGACATCCTCAAATATTTGAATAAACCCTCAAATGATCTTTGAAATGTAttcaaaagatcctcaaaacaTCTTTGAAAGAACCTcaagacatattttttttttttttataaatccgCAACGGATCTTTGTAACATATTTGAGAGACTCTTAAGAGACTCTCAAAAGAGCCTCAAAAGATCCTTGAAAGATTCCTTAAAGAGCCTCGCAGCATCTTTGAGAGATTCTCAAAAGAGCCTTGAAAGATTCTTGAAACATTTTCGAAAGATCCTCAAGACATCCACAAAAGATCTTTGAAACAGCTTTGAAAAATATGTGAAGCTACCTTAAAAGACCCTCGAAACCTCTTCGAAAGATCCTCAAAGGTTTCTCAAACATttcaaaagatcctcaaaagatCTTTTCTATTATGCACATAAGAAGGACAGTCAAACAGGTCTGGAACGATATGAGGACGAGCCAATAAAGACCAAAAGATTTATAGTAAACCTCATAAGTGAAGTACAGATttggtaattaattaattaatttcaccCTTTAAGTATAGAAAAAAGCTTGTGttgattttgtttcatttgtgtgTTGGCCTGTGTGAACTCAGGCAGGTAAACTGATTTAATTCCACCTTTAACATAATCAGTTACCGAATCGCGTATGAATGTCTgtattagtgtttgtgtgtgtgtgtgtcagtgtaaaTTTACTGGTTTTAACTACAAATTCCAAATCTCTCACCATCCAAGCCAAACCAATGCCTCCACGACCACagaacaaaacattaacaaaactaagacacaaatgaaaagaaaatctcGAAAGGATAAAAAAACCGAGGAGACTCTGCTGCTGTAATCCCACAGGAAGGCTGCAGTGTCATGCTGGTGCCTCTGGGCGCGCTATTGAGCAAGAGAGAAAGAGGAAGGGCTAGACACCTTATAAGGGCGGGTTAAAGGGTGTGCCCTCGTCACTGGGCGTGGCTGTATCATCACTAGGCTCTAGGCTGTCCTTTGGGCTCAGAGTGCTGTCGGAAGGGGGCGTGGCATCATCAGAAGGGGGCGGAGTTTCCGGCGAGCCGTCCTGCTGTCCATTAGGAGTGGCCTTATGCAGGGGTTCAGGGGGTGTTGGAGGTGGAGTGTTGGAGTCGGGATGGGTGCTGATGGCTAGTGAGACTGGCACCGCCATCGGCACAGGCTCAGTAGGAGTGTTGGGGATGCTGGGTACCGATGGCAGCCCCCGAGGGGTGGAGTTGTTCAGAAAGGAGTCGCCGAAGCCCAGACTGGAGTCGCTGTGCACCAATGAAGAGGTTTTTTCCACTAGACGCCACTGCATGATGCTCATGTCCTTGCCACCCGTGGAAACCAGGTGACTATCGTTGTGCATGAAGCTCACATTGGTCACGTGACTGCTGTGGGCGCTGTACTTGTGGCTTGGGGCCTGCAATTAAACAACAAAACCAAGGAAACTTCAGATGAATGCATTCATCAATCTTACCCAATTGACCCTTCGCAAAGCTCCTTCCCCTTCTCACTGTCTGACAAGCTTTCAGTATCATCCTATAACTCTGGGCACTCCTCAGGGAAATAGTGAATCATTTCTATACAAATTACATATTCAAATTCAATTAAAGGTCGGTGAAATTAAAATCCATTTTTTATGTTAGCTTTAGtctattcattttaaagatacctattagctagtgtgctccaaaatagTATTTGAAGATATACACCTGATTTAAACATCCAacgcttg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013541 False 4371 lncRNA 0.40 2 2923920 2928455
TCONS_00013542 True 3088 lncRNA 0.41 2 2924831 2928455

Neighbor

gene id symbol gene type direction distance location
XLOC_005721 wu:fj16a03 coding upstream 10021 2908764 ~ 2913899 (+)
XLOC_005720 CABZ01087629.1 coding upstream 22213 2894536 ~ 2901707 (+)
XLOC_005719 XPO5 coding upstream 31909 2861265 ~ 2892011 (+)
XLOC_005717 si:ch211-233m11.1 coding upstream 74063 2830574 ~ 2849857 (+)
XLOC_005718 BX571701.4 coding upstream 90713 2833092 ~ 2833207 (+)
XLOC_005723 NA coding downstream 14826 2943281 ~ 2944990 (+)
XLOC_005724 prph2b coding downstream 324495 3252950 ~ 3258772 (+)
XLOC_005725 AL935294.2 coding downstream 331088 3259543 ~ 3260961 (+)
XLOC_005726 NA coding downstream 690811 3619266 ~ 3620828 (+)
XLOC_005727 qkib coding downstream 738775 3667230 ~ 3843692 (+)
XLOC_005715 NA non-coding upstream 247584 2671432 ~ 2676336 (+)
XLOC_005710 CR376766.1 non-coding upstream 537387 2386413 ~ 2386533 (+)
XLOC_005708 CR376766.2 non-coding upstream 570925 2352289 ~ 2352995 (+)
XLOC_005706 NA non-coding upstream 770904 2149770 ~ 2153016 (+)
XLOC_005729 CU019624.1 non-coding downstream 966908 3895363 ~ 3907897 (+)
XLOC_005732 NA non-coding downstream 1051472 3979927 ~ 3985680 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G90629 LOC107586470,LOC107698167 non-coding NC_056711.1 CM032080.1 3945108 ~ 3951597 (-)