RNA id: TCONS_00011277


Basic Information

Item Value
RNA id TCONS_00011277
length 420
RNA type processed_transcript
GC content 0.49
exon number 3
gene id XLOC_005673
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 502230 ~ 514843 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGACGGTCGCAGACATTAGATCCGCTTAAGGAAGCCGATCATTTCCTGACTAACACATCTAGAGAAAACCCCCCGCAAAATAATCGCTAGATCAGCGCCAAAATGGGGAACCGCGTGGCGCGCGAGGATTTCGAGTGGGTTTACACGGACCAGCCGCACGCCGACCGGAGGAAAGAGATACTGGATTTCCTCAAGGAGTCTGAATATATGCCCACAAGCTCATAAATGACTGTTATTACTAATGAATCATGGGATTATTAccagCTAAATACCCAGAGATCAAGTCTCTGATGGGCCCTGACCCCAGGCTCAAATGGATAGTCAGCACGATGGTGGTTGTCCAGTTTTTGGCTTTCTACCTGGTGAAGGATCTGTCCTGGAAATGGGTGTTTTTCTGGACGTATGCATTTGGAAGTTGC

Function

GO:

id name namespace
GO:0046513 ceramide biosynthetic process biological_process
GO:0006629 lipid metabolic process biological_process
GO:0030148 sphingolipid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0042284 sphingolipid delta-4 desaturase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5283 Predicted to enable sphingolipid delta-4 desaturase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to act upstream of or within sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural crest; notochord; pronephric duct; and yolk syncytial layer. Used to study hypomyelinating leukodystrophy. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human DEGS1 (delta 4-desaturase, sphingolipid 1).

Ensembl:

ensembl_id ENSDART00000137494

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013523 lncRNA upstream 233002 268042 ~ 269317 (+) True XLOC_005661
TCONS_00013522 lncRNA upstream 259700 242088 ~ 242619 (+) True XLOC_005659
TCONS_00013521 lncRNA upstream 292587 202760 ~ 209732 (+) True XLOC_005656
TCONS_00013375 lncRNA upstream 479144 20646 ~ 23175 (+) True XLOC_005653
TCONS_00013374 lncRNA upstream 481740 18808 ~ 20579 (+) True XLOC_005652
TCONS_00011279 lncRNA downstream 23319 534458 ~ 544116 (+) True XLOC_005674
TCONS_00013526 lncRNA downstream 42452 553591 ~ 560985 (+) True XLOC_005675
TCONS_00013529 lncRNA downstream 347918 859057 ~ 861896 (+) False XLOC_005685
TCONS_00013528 lncRNA downstream 347918 859057 ~ 861896 (+) False XLOC_005685
TCONS_00013527 lncRNA downstream 347918 859057 ~ 861896 (+) False XLOC_005685
TCONS_00011275 mRNA upstream 11750 482911 ~ 490569 (+) True XLOC_005672
TCONS_00011273 mRNA upstream 72176 421231 ~ 430143 (+) True XLOC_005669
TCONS_00011272 mRNA upstream 84691 416648 ~ 417628 (+) True XLOC_005668
TCONS_00011271 mRNA upstream 89702 411607 ~ 412617 (+) True XLOC_005667
TCONS_00011270 mRNA upstream 94674 406635 ~ 407645 (+) True XLOC_005666
TCONS_00011278 mRNA downstream 23314 534453 ~ 545653 (+) False XLOC_005674
TCONS_00011280 mRNA downstream 135561 646700 ~ 664472 (+) True XLOC_005676
TCONS_00011281 mRNA downstream 158038 669177 ~ 670746 (+) True XLOC_005677
TCONS_00011282 mRNA downstream 163212 674351 ~ 678456 (+) True XLOC_005678
TCONS_00011283 mRNA downstream 170489 681628 ~ 711576 (+) True XLOC_005679
TCONS_00011274 other upstream 63857 438347 ~ 438462 (+) True XLOC_005670
TCONS_00011289 other downstream 333004 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011310 other downstream 1254368 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011320 other downstream 1875274 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011338 other downstream 2321953 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011360 other downstream 3451628 3962767 ~ 3966255 (+) True XLOC_005731

Expression Profile

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