RNA id: TCONS_00011271



Basic Information


Item Value
RNA id TCONS_00011271
length 1011
RNA type mRNA
GC content 0.40
exon number 1
gene id XLOC_005667
representative True

Chromosome Information


Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 411607 ~ 412617 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGATCCACCATGGGAACGTCAAACTGGGGAGGGACAAACACAGAGAACCAAACCGTCCATTACTGCTTTCCGAACAACAACTTGTCCTGTACTAAGAGTGTAAAGCCTGAAGCCGAGTACATGGTGGTGTACATTTTTGTGGGTGTAACATCAGTGTTCACCGTGTTCCTGAACTTGTtggtgatcatctccatctcACACTTCAAGCAGCTCCACACTCCGACCAATGTGTTGATTCTGTCTCTGGCAGTGGCTGATCTGATCGCAGGACTGATTCTCATGCCAGTGCAGGGGATGAAACTGATCGAGCCCTGCTGGTACTTTGGAGAAATGTTCTGCCCAATATTTCCTCTTATCCTCTATACTGTCGTGACAGTATCTCTTGGTAATTTGATCATTATATCAGTGGACCGGTACATTGCTGTGAATGACCCTTTACGATATCCACTGAAGGTCAATAACAGCAGGATTGTTGTTTCCATTGTTGTAAATtggttattttcctttttttattctttttacctTTTGTATGAAGTTTTACTTCACCCAGACACCACCCACTCCTGTATTGGAGAATGTGTACTTGTTGTAAAGGTGGAATATCTCATATTAGATgcctttgtttgttttgctgcTCCTTGCTCTGTAATTATATCTTTGTATGTGAAAATCTGTGTTGTAGCACACTATCAAGCCAAGAATATGAATGCAGTCACAGACAAGAAggccaaatcagaaaaaaaggcagCAAAAACCTTAGGGATTGTAGTGTTTGTTTATCTTCTGTGCTGGATGCCATACTATTTAATTACTCTTTCTCTCGGGCATGATGAAAATGATGCTCTTATCATTAATATAATGTACTGGATGTTATGCATGAATTCTTGTTTGAATCCTCTTATATATGCAATGTTTTATCGATGGTTTAGACTGTCAGCAAAATACATTTTGACTCTGAAAATATTTGAGCCTTCATCAGAATACTTTAACCTGTTCCCAGAAGAGAAATAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000186483

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00013523 lncRNA upstream 142290 268042 ~ 269317 (+) True XLOC_005661
TCONS_00013522 lncRNA upstream 168988 242088 ~ 242619 (+) True XLOC_005659
TCONS_00013521 lncRNA upstream 201875 202760 ~ 209732 (+) True XLOC_005656
TCONS_00013375 lncRNA upstream 388432 20646 ~ 23175 (+) True XLOC_005653
TCONS_00013374 lncRNA upstream 391028 18808 ~ 20579 (+) True XLOC_005652
TCONS_00013524 lncRNA downstream 58931 471548 ~ 704248 (+) False XLOC_005671
TCONS_00013525 lncRNA downstream 58934 471551 ~ 704338 (+) True XLOC_005671
TCONS_00011279 lncRNA downstream 121841 534458 ~ 544116 (+) True XLOC_005674
TCONS_00013526 lncRNA downstream 140974 553591 ~ 560985 (+) True XLOC_005675
TCONS_00013529 lncRNA downstream 446440 859057 ~ 861896 (+) False XLOC_005685
TCONS_00011270 mRNA upstream 3962 406635 ~ 407645 (+) True XLOC_005666
TCONS_00011269 mRNA upstream 7494 403103 ~ 404113 (+) True XLOC_005665
TCONS_00011268 mRNA upstream 48353 330555 ~ 363254 (+) True XLOC_005664
TCONS_00011267 mRNA upstream 92780 311380 ~ 318827 (+) True XLOC_005663
TCONS_00011266 mRNA upstream 126456 281214 ~ 285151 (+) True XLOC_005662
TCONS_00011272 mRNA downstream 4031 416648 ~ 417628 (+) True XLOC_005668
TCONS_00011273 mRNA downstream 8614 421231 ~ 430143 (+) True XLOC_005669
TCONS_00011275 mRNA downstream 70294 482911 ~ 490569 (+) True XLOC_005672
TCONS_00011276 mRNA downstream 89613 502230 ~ 514843 (+) False XLOC_005673
TCONS_00011278 mRNA downstream 121836 534453 ~ 545653 (+) False XLOC_005674
TCONS_00011274 other downstream 25730 438347 ~ 438462 (+) True XLOC_005670
TCONS_00011277 other downstream 89702 502319 ~ 511139 (+) True XLOC_005673
TCONS_00011289 other downstream 431526 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011310 other downstream 1352890 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011320 other downstream 1973796 2386413 ~ 2386533 (+) True XLOC_005710

Expression Profile


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