RNA id: TCONS_00013524


Basic Information

Item Value
RNA id TCONS_00013524
length 373
lncRNA type read_through
GC content 0.49
exon number 2
gene id XLOC_005671
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 471548 ~ 704338 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcgctctaggctagtttataacagcagacggtgctctaggctagtttataacagcagatggcgctctaggctagatttataacagcagatggcgctcttggctagtttataacagcagatggcgctctaggctagtttataacagcagacagcgctctaggctagtttataacagcagacggcgctctaggctagtttataacagcagatggcgctctaggctagtttataacagcagacggcgctctaggctagtttataacagcagacggcgctctaggctagagtataacagcagacggcgctctaggctagttaatAACAGctgacggcgctctaggctagtttataacagtagacggcgctctaggct

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0051028 mRNA transport biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0008380 RNA splicing biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0000775 chromosome, centromeric region cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013523 lncRNA upstream 202231 268042 ~ 269317 (+) True XLOC_005661
TCONS_00013522 lncRNA upstream 228929 242088 ~ 242619 (+) True XLOC_005659
TCONS_00013521 lncRNA upstream 261816 202760 ~ 209732 (+) True XLOC_005656
TCONS_00013375 lncRNA upstream 448373 20646 ~ 23175 (+) True XLOC_005653
TCONS_00013374 lncRNA upstream 450969 18808 ~ 20579 (+) True XLOC_005652
TCONS_00013529 lncRNA downstream 154809 859057 ~ 861896 (+) False XLOC_005685
TCONS_00013528 lncRNA downstream 154809 859057 ~ 861896 (+) False XLOC_005685
TCONS_00013527 lncRNA downstream 154809 859057 ~ 861896 (+) False XLOC_005685
TCONS_00013530 lncRNA downstream 154944 859192 ~ 861896 (+) False XLOC_005685
TCONS_00013531 lncRNA downstream 155081 859329 ~ 861896 (+) False XLOC_005685
TCONS_00011273 mRNA upstream 41405 421231 ~ 430143 (+) True XLOC_005669
TCONS_00011272 mRNA upstream 53920 416648 ~ 417628 (+) True XLOC_005668
TCONS_00011271 mRNA upstream 58931 411607 ~ 412617 (+) True XLOC_005667
TCONS_00011270 mRNA upstream 63903 406635 ~ 407645 (+) True XLOC_005666
TCONS_00011269 mRNA upstream 67435 403103 ~ 404113 (+) True XLOC_005665
TCONS_00011284 mRNA downstream 9693 713941 ~ 724385 (+) True XLOC_005680
TCONS_00011285 mRNA downstream 28779 733027 ~ 810080 (+) False XLOC_005681
TCONS_00011286 mRNA downstream 67155 771403 ~ 811276 (+) True XLOC_005681
TCONS_00011287 mRNA downstream 125337 829585 ~ 832331 (+) True XLOC_005682
TCONS_00011288 mRNA downstream 131142 835390 ~ 840787 (+) True XLOC_005683
TCONS_00011274 other upstream 33086 438347 ~ 438462 (+) True XLOC_005670
TCONS_00011289 other downstream 139895 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011310 other downstream 1061259 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011320 other downstream 1682165 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011338 other downstream 2128844 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011360 other downstream 3258519 3962767 ~ 3966255 (+) True XLOC_005731

Expression Profile

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