XLOC_005680 (cox15)


Basic Information

Item Value
gene id XLOC_005680
gene name cox15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 713941 ~ 724385 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011284
CAAAGAAAACCACAGAAGAAGAAGTGGAAACGAAGAAGAGTGTGCGGGAGGCTGGGCATGTTGGTTACATGACAGgttttgtaatatattattttccaGTAAATAACAGCGCTGGTGTATCTGTGAGCACGGGATCATGATGCTGCTCAGGCTGGCCATGTGTCGCTGTCAGGCGGCGAGAAACTTACAGCAGATACagcggACTCCCCTGCGGCAGTGGCTGTTGCAGCGAGGACAGAATACAGTGAGCTCGGGTGCAGCATCCGTGGGGTCAGTCTCCATCCGCAGCGCCGCCTCAGACCGGCTGATCGGCCGCTGGCTGCTGGGCTGCAGTGGGCTGGTGCTGGGGGCCGTGGTGCTGGGCGGAGTCACCAGACTGACCGAGTCTGGGCTCTCCATGGTGGACTGGCATCTGGTGAAGGAGATGAAGCCGCCGCAAACTCAAGCCGAGTGGGAACAAGAGTTCGCAAAGTACCAGCAGTTCCCAGAGTTCAAAATCATGAATCACGACATGACGCTGACAGAGTTTAAGTTCATCTTCTACATGGAGTGGGGTCACCGCATGTGGGGTCGTCTGGTGGGATTAGCTTACATTCTCCCCGCTGCGTATTTCTGGAGGAGAGGATACTTCAGCCGCTCCATGAAGACTCGGGTTTTGGGCCTGTGTGGCTTTGTTGTCtttcagGGTCTTCTGGGATGGTACATGGTGAAGAGCGGTCTGGAGGAGAAGCCCGAGTCCTATGATGTTCCTCGGGTCAGTCAGTACAGACTGGCGGCTCATCTAGGCTCCGCTCTGCTGCTGTACGCCGCCAGCCTCTGGACGGGACTCACACTCCTGCTGCCTGCCAACAGGATGCCGGACAGCAGACAACTGCTCAATCTCAGGAGGTTTGCCAAGATGACTGGAGGCCTGGTGTTCCTCACCGCTCTCTCAGGGGCTTTTGTGGCTGGTCTGGATGCAGGTTTGGTTTATAACTCCTTCCCGAAGATGGGCGAGCGCTGGATCCCAGATGACCTGTTAGCTTTTTCTCCAGCGCTCAAGAACGTCTTTGAAAACCCCACAACAGTGCAGTTTGACCACCGCATTCTGgGCATCGGCTCTCTGACCGCCATCACTGGACTCTACCTGTTCTCCAGGCGCATGATCCTCCCCAGAAGAGCCAAGATGGCCATCAGCCTCCTCACCGCCATGGCCTACACACAGgtggtGTTGGGCATCAGTACTCTCCTCCTGTATGTTCCCACTCCTCTGGCAGCAACGCATCAGTCCGGCTCCGTGGCTCTGCTCACCTTCGCCATCTGGGTCCTCGCAGAGCTCAGAAAGGTGCCCAAGTAGAAGCCCGACTCCATTTAACACTTTAATTacagatattttaataaataatgcttTGACTTGGAAGGAGAGCTACATCTTGTGCTTCTGCATTTATATGATGACGTGCACAACCTAATGTGTCTGTAAAATACATTGAActctttaaattactttttttatttaactttttttatttgtacatatTTGTCTTGGAAAATAATGCACTGTTTGACTCTTCGTCTGCTAAATAAAGTTATAATTGCTATCT

Function

symbol description
cox15 Predicted to enable oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor. Predicted to be involved in heme A biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in Leigh disease; fatal infantile cardioencephalomyopathy due to cytochrome c oxidase deficiency 2; and hypertrophic cardiomyopathy. Orthologous to human COX15 (cytochrome c oxidase assembly homolog COX15).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006784 heme A biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function
GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko00860 Porphyrin and chlorophyll metabolism
ko02020 Two-component system
ko04714 Thermogenesis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-040426-955 Predicted to enable oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor. Predicted to be involved in heme A biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in Leigh disease; fatal infantile cardioencephalomyopathy due to cytochrome c oxidase deficiency 2; and hypertrophic cardiomyopathy. Orthologous to human COX15 (cytochrome c oxidase assembly homolog COX15).

Ensembl:

ensembl_id ENSDARG00000075933

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011284 True 1583 mRNA 0.52 9 713941 724385

Neighbor

gene id symbol gene type direction distance location
XLOC_005679 abcc2 coding upstream 2365 681628 ~ 711576 (+)
XLOC_005671 NA coding upstream 9603 471548 ~ 704338 (+)
XLOC_005678 cutc coding upstream 35485 674351 ~ 678456 (+)
XLOC_005677 CU462915.1 coding upstream 43195 669177 ~ 670746 (+)
XLOC_005676 tp53bp2a coding upstream 49469 646700 ~ 664472 (+)
XLOC_005681 nrxn1b coding downstream 8642 733027 ~ 811276 (+)
XLOC_005682 gsta.2 coding downstream 105200 829585 ~ 832331 (+)
XLOC_005683 AL929536.3 coding downstream 111005 835390 ~ 840787 (+)
XLOC_005684 gsta.1 coding downstream 119758 844143 ~ 852506 (+)
XLOC_005685 NA coding downstream 134672 859057 ~ 861896 (+)
XLOC_005675 NA non-coding upstream 152956 553591 ~ 560985 (+)
XLOC_005670 CABZ01061569.1 non-coding upstream 275479 438347 ~ 438462 (+)
XLOC_005661 NA non-coding upstream 444624 268042 ~ 269317 (+)
XLOC_005659 NA non-coding upstream 471322 242088 ~ 242619 (+)
XLOC_005687 NA non-coding downstream 248624 973009 ~ 986263 (+)
XLOC_005701 CABZ01044297.1 non-coding downstream 1041122 1765507 ~ 1765622 (+)
XLOC_005705 NA non-coding downstream 1258926 1983311 ~ 2033043 (+)
XLOC_005706 NA non-coding downstream 1425385 2149770 ~ 2153016 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_06609686_06619218 COX15 coding CI01000005 null 6609642 ~ 6619218 (-)