RNA id: TCONS_00011272



Basic Information


Item Value
RNA id TCONS_00011272
length 981
RNA type mRNA
GC content 0.43
exon number 1
gene id XLOC_005668
representative True

Chromosome Information


Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 416648 ~ 417628 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ACAAACATGGACAATCGATCACTCCAGTACTGCTTCCCGAACAACAATCTGTCTTGTACCAAAAGTATCCGACCTGAAGCCGAGTACATGGTGGTGTACATTTTTGTGGGCGTAACATCAGTGTTCACCGTGTTCCTGAACTTGTTGGTGATCATTTCCATCTCACACTTCAAGCAGCTCCACACTCCGACCAATGTGTTGATTCTGTCTCTGGCAGTGGCTGATCTGATCGCAGGACTGATTCTCATGCCAGTGCAGGGAATGAAACTGATCGAGCCCTGCTGGTACTTTGGAGAAATGTTCTGCTCCATATTTCCTCTTATCCTCTATGTGGTCGTGGTGGCATCTCTGGGTAACATGATCATCGTGTCAGTGGACCGGTTCATTGCAGTGAATGACCCTTTACGATATCCACTGAAGGTCAACAACAGCAGAGTGGTCATTTCTATAGTTGTGAACTGGGTATTCTCCTTTCtgtattccttttatttattatacgaGTTTTTACTTCATCCGGAAACCACACACACTTGTATTGGAGAATGTGTACTTGTTGTTACACTGGAAAATCTAATAATCGATGCTTTGGTTTGTTTAATGGCACCGTGCTGCATCATCATCCCCTTATATGTGAAGATCTGCTATGTTGCGAAAAGGCAAGCAAAGCATTTAAATTCAGTCACAGAAAAAAAGGCCAAGTCTGAAAAGAAAGCAGCCAGAACCCTGGGCATCGTAGTGCTTGTTTATCTTCTGTTCTGGACTCCCTACTACATCGTGACTCTTTCATTTGGACATGATGAAAACGATGCGCTGATAATTAATGTGATGTACTGGTTGTTATGCATGAACTCCTGCATGAATCCGCTCATCTATGCCATGTTTTATCAGTGGTTTCGAGTGTCTGCAAAATATATATTGACTCTGAAAATATTTGAGCCTTCATCCAAATACTTAAACCTGTTCCCAGAAGCACACATGTAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000164906

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00013523 lncRNA upstream 147331 268042 ~ 269317 (+) True XLOC_005661
TCONS_00013522 lncRNA upstream 174029 242088 ~ 242619 (+) True XLOC_005659
TCONS_00013521 lncRNA upstream 206916 202760 ~ 209732 (+) True XLOC_005656
TCONS_00013375 lncRNA upstream 393473 20646 ~ 23175 (+) True XLOC_005653
TCONS_00013374 lncRNA upstream 396069 18808 ~ 20579 (+) True XLOC_005652
TCONS_00013524 lncRNA downstream 53920 471548 ~ 704248 (+) False XLOC_005671
TCONS_00013525 lncRNA downstream 53923 471551 ~ 704338 (+) True XLOC_005671
TCONS_00011279 lncRNA downstream 116830 534458 ~ 544116 (+) True XLOC_005674
TCONS_00013526 lncRNA downstream 135963 553591 ~ 560985 (+) True XLOC_005675
TCONS_00013529 lncRNA downstream 441429 859057 ~ 861896 (+) False XLOC_005685
TCONS_00011271 mRNA upstream 4031 411607 ~ 412617 (+) True XLOC_005667
TCONS_00011270 mRNA upstream 9003 406635 ~ 407645 (+) True XLOC_005666
TCONS_00011269 mRNA upstream 12535 403103 ~ 404113 (+) True XLOC_005665
TCONS_00011268 mRNA upstream 53394 330555 ~ 363254 (+) True XLOC_005664
TCONS_00011267 mRNA upstream 97821 311380 ~ 318827 (+) True XLOC_005663
TCONS_00011273 mRNA downstream 3603 421231 ~ 430143 (+) True XLOC_005669
TCONS_00011275 mRNA downstream 65283 482911 ~ 490569 (+) True XLOC_005672
TCONS_00011276 mRNA downstream 84602 502230 ~ 514843 (+) False XLOC_005673
TCONS_00011278 mRNA downstream 116825 534453 ~ 545653 (+) False XLOC_005674
TCONS_00011280 mRNA downstream 229072 646700 ~ 664472 (+) True XLOC_005676
TCONS_00011274 other downstream 20719 438347 ~ 438462 (+) True XLOC_005670
TCONS_00011277 other downstream 84691 502319 ~ 511139 (+) True XLOC_005673
TCONS_00011289 other downstream 426515 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011310 other downstream 1347879 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011320 other downstream 1968785 2386413 ~ 2386533 (+) True XLOC_005710

Expression Profile


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