XLOC_005666 (CU570800.4)


Basic Information

Item Value
gene id XLOC_005666
gene name CU570800.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 406635 ~ 407645 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011270
AGATCCACCATGGGAACGTCAAACTGGGGAGGGACAAACACAGACAATCAAACCGTCCATTACTGCTTTCCGAACAACAACTTGTCCTGTACTAAGAGTGTAAAGCCTGAAGCCGAGTACATGGTGGTGTACATTTTTGTGGGTGTAACATCAGTGTTCACCGTGTTCCTGAACTTGTtggtgatcatctccatctcACACTTCAAGCAGCTCCACACTCCGACCAATGTGTTGATTCTGTCTCTGGCAGTGGCTGATCTGATCGCAGGACTGATTCTCATGCCAGTGCAGGGGATGAAACTGATCGAGCCCTGCTGGTACTTTGGAGAAATGTTCTGCCCAATATTTCCTCTTATCCTCTATACTGTCGTGACAGTATCTCTTGGTAATTTGATCATTATATCAGTGGACCGGTACATTGCTGTGAATGACCCTTTACGATATCCACTGAAGGTCAATAACAGCAGGATTGTTGTTTCCATTGTTGTAAATtggttattttcctttttttattctttttacctTTTGTATGAAGTTTTACTTCACCCAGACACCACCCACTCCTGTATTGGAGAATGTGTACTTGTTCTACAGGTGGAATATCTTATATTAGATTCCTTTGTTTGTTTTGCCGCACCTTGCTGTGTTATTGTTTCTTTGTATGTGAAAATCTGTGTTGTAGCACACTATCAAGCCAAGAATATGAATATAGTCACAGACAAGAAggccaaatcagaaaaaaaggctGCAAAAACCTTAGGGATTGTAGTGTTTGTTTATCTTCTGTGCTGGATGCCATACTACCTAACTACTCTTTCTCTCGGGCATGATGAAAATGATGTTCTTATCATTAATGTAATGTACTGGATTGTATGCATGAATTCCTGTTTGAATCCCCTTATATATGCAATGTTTTATCGATGGTTTAGACTGTCAGCAAAATACATTTTGACTCTGAAAATATTTGAGCCTTCATCAGAATACTTTAACCTGTTCCCAGAAGAGAAATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000109754

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011270 True 1011 mRNA 0.40 1 406635 407645

Neighbor

gene id symbol gene type direction distance location
XLOC_005665 FO904836.1 coding upstream 2522 403103 ~ 404113 (+)
XLOC_005664 CU633838.1 coding upstream 43381 330555 ~ 363254 (+)
XLOC_005663 irf1a coding upstream 87808 311380 ~ 318827 (+)
XLOC_005662 mpc1 coding upstream 121484 281214 ~ 285151 (+)
XLOC_005661 NA coding upstream 137318 268042 ~ 269317 (+)
XLOC_005667 CU570800.3 coding downstream 3962 411607 ~ 412617 (+)
XLOC_005668 CU570800.2 coding downstream 9003 416648 ~ 417628 (+)
XLOC_005669 lgi1a coding downstream 13586 421231 ~ 430143 (+)
XLOC_005670 CABZ01061569.1 coding downstream 30702 438347 ~ 438462 (+)
XLOC_005671 NA coding downstream 63903 471548 ~ 704338 (+)
XLOC_005659 NA non-coding upstream 164016 242088 ~ 242619 (+)
XLOC_005656 NA non-coding upstream 196903 202760 ~ 209732 (+)
XLOC_005653 NA non-coding upstream 383460 20646 ~ 23175 (+)
XLOC_005652 NA non-coding upstream 386056 18808 ~ 20579 (+)
XLOC_005675 NA non-coding downstream 145946 553591 ~ 560985 (+)
XLOC_005685 NA non-coding downstream 451412 859057 ~ 861896 (+)
XLOC_005687 NA non-coding downstream 565364 973009 ~ 986263 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_07093538_07094533 NA coding CI01000005 null 7093482 ~ 7094569 (-)