XLOC_005656


Basic Information

Item Value
gene id XLOC_005656
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 202760 ~ 209732 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013521
caaaagcacaTCACATGcgcaaaatggagagctcattcctcaaaagcaagtattcatgtcaatcagtGTCAGTGTCAAGATGAAAAGTCCCGACATCATTATGAACAAAATAGTGAAATGgctgtgtcatgttttcattatgacggTTCACTCTGGACAGTttatcaatgcaaaaaaagtcagatgttggtgacacttgCTGATAATGCTccagacagcactgtatactgtatgcagagccatttgaaaactacagtaaagtcagACCTCACTGCATTAGTAAagcatctgagtacaagacactgaatatgtatgtttcacatgtttactgccTTCGCTCGTtgtaattctaatttattcacagcattgtgcaaaagaataaacacccttatttacaacaagcatAAGCTTCCTTTGGGTTGAACTGTACACAACTGTAAACTGTTGCAGAACATATTGGCACTGAACCTACAACATGCACAgctctgtaaatcattcatcaaattgttcaattttaaagacattttcagaaacaaaaatacattttttttataaaatttccttgacagattttgacattAGTTCAACATTTGTGTATGTACTGACACATGTAATGAGGACTGTTAGCTTTATATGGAGTGACTATTCAGCGTTCACAAGTTTAtgtaattttgactgacatgacataagcagatgatgaTGTTATAAACAGctgagttgtatgaaagcagttGATGCATGTCCTGAAGCATCTGCAATTTGTGTGAAGGAACGGGAAACTGCTActgtgatgtgcacaaatgactaactgtGTTGAGAAATGCATGAGCTGTTGTGCAGAGGTAAATAGTGtcgtgagaaatgcaccaaagccactgagaaaaactgtaatagtcGTGGCATTTCCACTGCACAAGCGTTTTTCACTCAACTCATTCCAAGCTGATGTGCATTTGTTTGCTCCTGCCTGCACGGTTAATATGGAAATGATGGCAAGTCTGAACTCTCGTAAAGAGCTTAGACTGTGACTGTGTGCTGTTTGACTCATGTGACGATTACACGGTGCATTTTCAGCTGAGTCTCATcactttttccccagagctgatTATTTGTGATTATAAAGCTAAACAGTCCGTGCTATTTTGAGCTTTTATATCACAGTTTTGCGCTGATTTGGGGTTCTCACTGTCCTGTTCAACACTGTTGGTCACATACAGTACGCTGTGGTTCCAGTGGAGCAGACAGGCCGTGAGGACAATCCTAACTTATTCTGATGGCAGGAAGGCCCGCATTAGAAATGTAAGTGCTGTACTTTTAACtttggaaagaaaaaaagattatgGACTAACAAATGGAAACTATGAGCCAGAATTGTTCTGTTTCCTTGTTTGCAACAGCAATTGTTTTTGATTTACTAGATTTATTGCCTTATAAGAGCTCTTATATTCACACAGATCCTGCTCGACTGGCGGGTGCAGATGCAGTTGAGTTCAGCGGTTTATTTCAACTTGTATCAAGTGCTGGGTAAAACCTGACAGCGTCCACAATGCTCTTAAAATTACTCCAGATTTGAGCATCTTCAGGGAAAGGAAAAGGCTGGTCAGCTGTTGGCTGAGCTCTTGTGTCAGACAGAGGATCTCTCACGAGGACCCTTACTATCAAGTTTCCACAGGAATCATCTGCATCGATAAAGTCCACGTCTTACCCCATCCAGAGTGTTCATCATCTCTCACCATTCATACAGACCTGCCTCCTCCAGTCTTCTGTTGTCTTCTCGGACTCGTGTATCTCCTGCTCTGAAATCAGTGTCATCTTGCTGTTACAGTGTGAAGCGCTGCAGCTGGTGGAGAAGCTTTGCCCTGGTCACTGATCTGCAGACTCTCTGCTGGGAGTGGAGAGCTGTGCTTAACCTGCTGGCCTGATGCTCAGTCATGAGATTGGATTGTTTACACCTTTTATGACTGTCTGCTGGCTGCCTGGAGCTGGTCTGTGGTTTCGTTGTGGTTGTATGGGACCAGCTCTGACCAGTATTGTGGTTGTGTTTCTGCCTGCCCCTGGATCAATGTAGCAGTCGATTCTGTTCCCTTCTGGTTTTCCGGTTCCCCCTATACGAAGCGTGTCCGCTAACAGAGTCTCCAGACACAATCCCAACACAACTGGGTGTATGGAAAGCGAAGATGGACGAGGCTTTCATGTCTTGAATGCACAATGAAAGACCGttgattaacatttttattagttttttattttattatttatattggattttgcatttatttattcatttaataaaaacattgctCACTGCATAGGCTGGAGTTTATTAAAGGGTCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0006397 mRNA processing biological_process
GO:0010467 gene expression biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013521 True 2335 lncRNA 0.41 7 202760 209732

Neighbor

gene id symbol gene type direction distance location
XLOC_005655 ewsr1b coding upstream 23996 159504 ~ 178764 (+)
XLOC_005654 dnaaf2 coding upstream 88919 111212 ~ 113841 (+)
XLOC_005653 NA coding upstream 179585 20646 ~ 23175 (+)
XLOC_005652 NA coding upstream 182181 18808 ~ 20579 (+)
XLOC_005651 ppp4r3b coding upstream 187407 9100 ~ 15353 (+)
XLOC_005657 zgc:64201 coding downstream 18313 228045 ~ 229022 (+)
XLOC_005658 cfap36 coding downstream 23750 233482 ~ 238375 (+)
XLOC_005659 NA coding downstream 32356 242088 ~ 242619 (+)
XLOC_005660 foxg1d coding downstream 45335 255067 ~ 257821 (+)
XLOC_005661 NA coding downstream 58310 268042 ~ 269317 (+)
XLOC_005670 CABZ01061569.1 non-coding downstream 228615 438347 ~ 438462 (+)
XLOC_005671 NA non-coding downstream 261816 471548 ~ 704338 (+)
XLOC_005675 NA non-coding downstream 343859 553591 ~ 560985 (+)

Expression


Co-expression Network