XLOC_005654 (dnaaf2)


Basic Information

Item Value
gene id XLOC_005654
gene name dnaaf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 111212 ~ 113841 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011261
ATGGACGCGGACAGACTGGCGGAGCTGCAGCTGACGCGCGCGGAGATGCGGCGGATCGGCGAGGCGCTGCAGGACCGGCGCTTCCGCGAGTTACTGACCCAATATGTGGAGGAGATCTCGAGCCCCGAGAACCGGCGCCGCTACGAGGAGGAGATCCGGCGGCTGGAGGAGGAGCGCGGCGCGGCGGTGCAGTTCATTCACCCGACGCCGCATCACGTGCTGAAGGGCCGCGGCCCGAGCGGGAAGTGCTTCATCAACATCTGCTCCGATCAGCTGATCGAGAAACCGCGCAGCGAGGCGGCCACCGACGACCGCGGGAGATCCGGCCACAGCTGGCGGATCCCGTACAGCCTGACTCCCGGCCGAGCGGGCAGAGACGCCGCCGGGGCGCCGTGCGTGCTGTTCGACGCGGTGTTTCACCCGGACGCGCTGCTGATGGCGGAGAATAACGCGCGGTTCATGACGCTGATCCACCGCACGGCGACCGGCGGCATCCAGGACAACTTCCGCATCCGGCTGGAGCACGTGACGCGGCTGAAGATGATGAAGTATAAAGGAGAACCGCAACCCACCATGATCCGCAGGCCGAACCCGGGCCAGACAGAGGCTGCAGACCGCGGCCCACAGCAGCCCACCGACCCACAGCAGACCACCGGCCCACAGCAGCCAACTGACACACAGCAGCCAACTGACACACAGCAGCCCACCGACCCACAGCAGACCACCGGCACACAGCAGACTACCGACCCACAGCAGACCACCGGCCCACAGCAGCCTACTGACCCACAGCAGACCACTGACCCACAGCAGTCCACTGACCCACATCAGCCCACCGGCCCACATCAGCCCACCGACCCACAGCAGACTACTGACCCACCCCCCACTGCCCCGCAGTACCGCCTGAAGTACCGCTCTGTGCTGGACCTGCAGGACTACCGCTGCTGCAGAGACTCGGGGTCTGCGGGCCGGCCCACCGCCATCATCATCGAGGTGGAGGTTCCCCGGCTGAGGAGCGCACAGGAGGCGGAGCTGCGGGTGGAGGAGCGGCGGCTGCTGCGGAGGCCCCGACGGCGGAGTACAGGCTGGAGCTGCCGCTGGCCTACCCGGTGGAGGAGGAGCGGGCGGAGGCGCAGTTCAACCACACCCACAGACTGCTGACCGTCACCCTGCCGGTGCTGAAGAGGAggagggtggaggaggaggagaggagggcggaggaggagGAGAGTAGGAAAGGTGGAGACGAAGATGGAGAGCTTCACCCAGACTGTGGTCCTGACCCACCAATGATGGAGCTGCAGactgaagacacacacactcctcctgcagacacacacactcctcctgcagatacacacactcctcctgcagacacacacactcccGCTGCAGAAACTGGAGCTGGTCTCGGCAGCGGTGCGGCTCTGCTCTCCTCTTCTAATGTCATCAGTGTGTGTGGAGCAGATGTTCATCAGCAGCTGGAGGAGCCAGGAGACCCTTCAGCACACACTGACCCAGCACACACTCACCCAGCAGACACTGACCCAGCAGACACTGACCCAGCACACAACACTGACCCAGCACACACTGACCCAGCAGACACTGACCCAGCACACACTGACCCAGCACACACTGACCCAGAGATGGAGAGCCGCATTGCTGGTCTGCACCTCCAGAACACTCTGTGCTTCCAGTTGGACTGA

Function

symbol description
dnaaf2 Acts upstream of or within axonemal dynein complex assembly. Predicted to be located in dynein axonemal particle. Is expressed in Kupffer's vesicle; brain; floor plate; otic vesicle; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 10. Orthologous to human DNAAF2 (dynein axonemal assembly factor 2).

GO:

id name namespace
GO:0070286 axonemal dynein complex assembly biological_process
GO:0060285 cilium-dependent cell motility biological_process
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-050809-128 Acts upstream of or within axonemal dynein complex assembly. Predicted to be located in dynein axonemal particle. Is expressed in Kupffer's vesicle; brain; floor plate; otic vesicle; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 10. Orthologous to human DNAAF2 (dynein axonemal assembly factor 2).

Ensembl:

ensembl_id ENSDARG00000103132

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011261 True 1703 mRNA 0.65 7 111212 113841

Neighbor

gene id symbol gene type direction distance location
XLOC_005653 NA coding upstream 88037 20646 ~ 23175 (+)
XLOC_005652 NA coding upstream 90633 18808 ~ 20579 (+)
XLOC_005651 ppp4r3b coding upstream 95859 9100 ~ 15353 (+)
XLOC_005655 ewsr1b coding downstream 45663 159504 ~ 178764 (+)
XLOC_005656 NA coding downstream 88919 202760 ~ 209732 (+)
XLOC_005657 zgc:64201 coding downstream 114204 228045 ~ 229022 (+)
XLOC_005658 cfap36 coding downstream 119641 233482 ~ 238375 (+)
XLOC_005659 NA coding downstream 128247 242088 ~ 242619 (+)
XLOC_005661 NA non-coding downstream 154201 268042 ~ 269317 (+)
XLOC_005670 CABZ01061569.1 non-coding downstream 324506 438347 ~ 438462 (+)
XLOC_005671 NA non-coding downstream 357707 471548 ~ 704338 (+)

Expression


Co-expression Network