XLOC_005651 (ppp4r3b)


Basic Information

Item Value
gene id XLOC_005651
gene name ppp4r3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9100 ~ 15353 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011260
ATGAGCGACACCCGACGGCGCGTGAAGGTTTACACGCTGAATGAAGAGCGGCAGTGGGAGGACAGAGGAACCGGCCATGTGTGCTGCTCCGCCGAGGACACCGCGCTGTCGGTCACCGCAGAGTCTGACGGGTCACTGCTGCTCGAGTCCAAGATCAAGCCCAGCACTGCCTATCAGAAACAGCAGGACACACTGATCGTCTGGTCTGAAGCGGAGAACTATGATCTGGCTCTGAGTTTCCAGGAGAAGGCCGGCTGTGACGAGATCTGGGAGAAGATCTGTCAGgtccaAGGCAAGGACCCGTCAGTGGAGATCACGCAGGAGCCGGTGGATGAGTCTGAGGAGGAGCGCTGTGAGGACTCTGGAGCGGAGTGTGATGCTCTGGATCTGCCCGAGTGTGTGCCGGAGCGTCTGCAGGAGCTGGCGGAGCTGGTGTCGTCGGTGCTGCCATCGCCGGTGCGCAGGGAGAAGCTGGCGCTGGCGCTGGTGAGCGGCGGGTACCTGCggcagctgctgctgctgttcCGGCGCTGTGAGGAGCAGGAGAACCGGCCGCGGCTGCAGCAGCTCTTCCAGATCCTGCGCGGGCTGCTGTTCCTCAATAAGGCGGCGCTGTTCGAGGTGCTGTTCTCCGACGACTGCATCATGGACGTGGTGGGCTGCCTGGAGTACGACCCCGCGCTGCTGCAGCCCAAACGCCACCGGGACTTCCTCACCAAGACGGCACGCTTCCGGGAGGTGATCCCCATCCAGGACTCGGAGCTGCGGCAGAAGATCCACCAGACCTACCGCGTGCAGTACATCCAGGACATCATCCTGCCCACGCCCTCCGTCTTCGAGGAGAGCTTCCTGTCCACGCTCTCCTCCTTCATCTTCTTTAACAAAGTGGAGATCGTCGCCATGCTGCAGGAGGACATCCGCTCGCTCACTGCACACATTGTGGAGAACTTCCAGAGCGCGCTGCAGTCCATCCAGTATGTGCAGACCTTCAAGGGCCTGAAGGGGAGATACGAGCAGGAGCAGGAGCGCCAGAGCCGCGGCCTCAGCAGTTCACCTTCTCCCACTCTGCAGCGTCTGCTAACAGCGCTAAAGCTACATCTGCGTCATCCAGCGGAGCCAGCACTGCAGCcagggtcacacacacacacacacacacacatgctcatacacacaagcatgcacacactCAGACTCCTGCACATGCATTCacaagctcacacacacactctctctctgctgtgtgctgacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcctcaGACGGCGCTGGTGGATTAcccagatgatgaagatgaggatgaggatgatgatgaagatcaGCAGGCTCCACACAAGCGCCCCCGTCTGGGCTCGTAGAGCGGTGCAGGGGCTGCTGGGAGATCATCTGCGCAGGCTAGCAGGACTAGACTGAACACTAGCGCTGCTGCTCTGAGCCCTGATCCTGCGCTACACACACCTGTGATGCTGacgagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattaaactGTGCGTTTGCTGCAGTaatgctgaagtgtgtgtgtgtggatcagaGACGGAGTGTGTCTTCAGGGTGTCTGAGGTGCGGGCCGGGCCGGCGTGGAGCCGCTGCTCTGGGTTTTGTACACTTTCCTACTGGCTCGTCTCGCTCGTTTGTATAA

Function

symbol description
ppp4r3b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PPP4R3B (protein phosphatase 4 regulatory subunit 3B).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8142 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PPP4R3B (protein phosphatase 4 regulatory subunit 3B).

Ensembl:

ensembl_id ENSDARG00000103415

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011260 True 1724 mRNA 0.59 6 9100 15353

Neighbor

gene id symbol gene type direction distance location
XLOC_005652 NA coding downstream 3455 18808 ~ 20579 (+)
XLOC_005653 NA coding downstream 5293 20646 ~ 23175 (+)
XLOC_005654 dnaaf2 coding downstream 95859 111212 ~ 113841 (+)
XLOC_005655 ewsr1b coding downstream 144151 159504 ~ 178764 (+)
XLOC_005656 NA coding downstream 187407 202760 ~ 209732 (+)
XLOC_005659 NA non-coding downstream 226735 242088 ~ 242619 (+)
XLOC_005661 NA non-coding downstream 252689 268042 ~ 269317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_07516913_07529647 PPP4R3B coding CI01000005 null 7516673 ~ 7529647 (+)