XLOC_005658 (cfap36)


Basic Information

Item Value
gene id XLOC_005658
gene name cfap36
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 233482 ~ 238375 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011264
ATGGCGGAGGACAGTGAGTGGGTCCCGGAGAGCATCGCGGGGTTTCTGGGCAGCCCGGACTGGCTGATCCCGCTGGCGGAGTTCATGGAGAGCCGCTGCTCAGTGTTTGATGACGAGGACGAGAATAAACTGACCTACACGGAGATCCATCAGCAGTACAAGCAGCTGGTGGAGCGTCTGCTGGAGAACTACATGCAGGATGTGGGCATCAGCGAGCAGCAGTTTCTGGAGGCCTGCTCCTCCTTCAGCAGCTCTGCATCTCTGCAGCGCTGGTCCAGGCCTGCTCTCGTTACAGACCACTTCTTCATGCACCGTCACACTTTATTAATCAGACGCATTCATCTACAGCTACAGGCGCTGCACGTCATCAAGCAGAGGAAcggcggGCTGCCGGAGTGTTTGACAGACGGTGTGGATGTGATGTCTGAACTGGAGCAGCAGGAAATGAAGATTCTTCAGGAGGTTCTCAGgaggtCTAAGGAGGAGTATGATCTGCAGATGGGTCAGTGTGGGCTGGGCAGTGAGGATCTTGCCTCCACCTCCAGCAGTGTGTCTGAGACTCCACAGAACCCTGAGCAGCGGCTGAGCAACGGGGTGAGTGACCCACTGACACTGACCCAGCCTGACTCTGAGATGGAGGAGTCCAGCACAGCCACACAGAGGAAGAGGGAGGAGAGCGAGCCCACGGCCACCGCAGCCTgTAAGAGTAAAGCTCTCCCGGCGGTCAGGGCTCCGCTCAGGGGTTCAGTGTGTGTGAAGCAGAGcagtgcagagagagagagagagctggagcgagtgagagacacacacacagactgcagaACACTGAccgatGAGGTGGCGTTACAGCAGCGCTCCGAGTATCTGAAGCAGCAGAGAGATAAACTGCAGGCGCTGAAGAGACAGACGGGGAAGGGGCTCACGGACACGGCAGCGGCGGCGGCCCCCGAGCCCAAACCAGccacacagGAGATCTCTGTGGAGGAGAAGAAGAAGCTGCAGAAGAGGAAGCACGTGGCGGAGAAGCTGAAGGAGGAGGTGATCAAGAAGTGA

Function

symbol description
cfap36 Predicted to be located in cytoplasm; motile cilium; and nucleus. Predicted to be active in axoneme and ciliary base. Orthologous to human CFAP36 (cilia and flagella associated protein 36).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0005634 nucleus cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component
GO:0097546 ciliary base cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-8162 Predicted to be located in cytoplasm; motile cilium; and nucleus. Predicted to be active in axoneme and ciliary base. Orthologous to human CFAP36 (cilia and flagella associated protein 36).

Ensembl:

ensembl_id ENSDARG00000037079

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011264 True 1053 mRNA 0.58 13 233482 238375

Neighbor

gene id symbol gene type direction distance location
XLOC_005657 zgc:64201 coding upstream 4460 228045 ~ 229022 (+)
XLOC_005656 NA coding upstream 23750 202760 ~ 209732 (+)
XLOC_005655 ewsr1b coding upstream 54718 159504 ~ 178764 (+)
XLOC_005654 dnaaf2 coding upstream 119641 111212 ~ 113841 (+)
XLOC_005653 NA coding upstream 210307 20646 ~ 23175 (+)
XLOC_005659 NA coding downstream 3713 242088 ~ 242619 (+)
XLOC_005660 foxg1d coding downstream 16692 255067 ~ 257821 (+)
XLOC_005661 NA coding downstream 29667 268042 ~ 269317 (+)
XLOC_005662 mpc1 coding downstream 42839 281214 ~ 285151 (+)
XLOC_005663 irf1a coding downstream 73005 311380 ~ 318827 (+)
XLOC_005652 NA non-coding upstream 212903 18808 ~ 20579 (+)
XLOC_005670 CABZ01061569.1 non-coding downstream 199972 438347 ~ 438462 (+)
XLOC_005671 NA non-coding downstream 233173 471548 ~ 704338 (+)
XLOC_005675 NA non-coding downstream 315216 553591 ~ 560985 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_07474381_07477140 CFAP36 coding CI01000005 null 7474381 ~ 7477688 (+)