RNA id: TCONS_00011288



Basic Information


Item Value
RNA id TCONS_00011288
length 672
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_005683
representative True

Chromosome Information


Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 835390 ~ 840787 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGTCCGGGAAAGTCGTGCTGCATTACTTCAATGGCAGAGGGAGGATGGAGTCGATCCGGTGGCTTCTGGCTGCTGCTGGAGTCCAGTTTGAGGAGGTGTTTCTCACAGAAAAGGAGCAGTTTGACAAACTCCTGAGCGATGGAGTTCTGACGTTCCAGCAGGTTCCTCTGGTGGAGATCGACGGGATGAAACTGGTACAGTCGAAGGCCATCCTGAACTACATCGCAGGAAAATACAACCTCTATGGAAAAGACCTTAAAGAGCGAGCCATGATCGACATTTACTCAGAGGGTCTGATAGATCTGATGGGAATGATCATAATGGCTCCGTTCACACCTGCCGAAAACAAAGAGGAAACCTTCAGAAACATCGAGGAGAAGGCCAAAGTGCGCTTCCTTCCAGTGTTCGAGAAGGCTCTCGCAAACTCTTCTTTCCTCGTGGGAAAGCAGCTGAGCCGTGCTGATGTTCATCTTCTGGAAGCTACGCTGATGCTGCAGGAGCTGTTTCCTTCCATACTGGCCACATTCCCCAAAATTCAGGCGTTTCAGGACCAAATGAAGGCTTTACCAGCGATCAGCAAGTTCCTCCAGCCGGGCAGCGCTAGGAAACCTCCACCAGATGAGGAGTATGTGAGAATAGTGAAGGCCGTGTTGCCATATCGCTTCAAATAG

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000171329

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00013525 lncRNA upstream 131052 471551 ~ 704338 (+) True XLOC_005671
TCONS_00013524 lncRNA upstream 131142 471548 ~ 704248 (+) False XLOC_005671
TCONS_00013526 lncRNA upstream 274405 553591 ~ 560985 (+) True XLOC_005675
TCONS_00011279 lncRNA upstream 291274 534458 ~ 544116 (+) True XLOC_005674
TCONS_00013523 lncRNA upstream 566073 268042 ~ 269317 (+) True XLOC_005661
TCONS_00013529 lncRNA downstream 18270 859057 ~ 861896 (+) False XLOC_005685
TCONS_00013528 lncRNA downstream 18270 859057 ~ 861896 (+) False XLOC_005685
TCONS_00013527 lncRNA downstream 18270 859057 ~ 861896 (+) False XLOC_005685
TCONS_00013530 lncRNA downstream 18405 859192 ~ 861896 (+) False XLOC_005685
TCONS_00013531 lncRNA downstream 18542 859329 ~ 861896 (+) False XLOC_005685
TCONS_00011287 mRNA upstream 3059 829585 ~ 832331 (+) True XLOC_005682
TCONS_00011286 mRNA upstream 24114 771403 ~ 811276 (+) True XLOC_005681
TCONS_00011285 mRNA upstream 25310 733027 ~ 810080 (+) False XLOC_005681
TCONS_00011284 mRNA upstream 111005 713941 ~ 724385 (+) True XLOC_005680
TCONS_00011283 mRNA upstream 123814 681628 ~ 711576 (+) True XLOC_005679
TCONS_00011290 mRNA downstream 3363 844150 ~ 852506 (+) True XLOC_005684
TCONS_00011291 mRNA downstream 71336 912123 ~ 977652 (+) True XLOC_005686
TCONS_00011292 mRNA downstream 174962 1015749 ~ 1025224 (+) True XLOC_005688
TCONS_00011293 mRNA downstream 249155 1089942 ~ 1097017 (+) True XLOC_005689
TCONS_00011294 mRNA downstream 259410 1100197 ~ 1120773 (+) True XLOC_005690
TCONS_00011277 other upstream 324251 502319 ~ 511139 (+) True XLOC_005673
TCONS_00011274 other upstream 396928 438347 ~ 438462 (+) True XLOC_005670
TCONS_00011289 other downstream 3356 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011310 other downstream 924720 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011320 other downstream 1545626 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011338 other downstream 1992305 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011360 other downstream 3121980 3962767 ~ 3966255 (+) True XLOC_005731

Expression Profile


//