RNA id: TCONS_00011389


Basic Information

Item Value
RNA id TCONS_00011389
length 725
RNA type nonsense_mediated_decay
GC content 0.45
exon number 4
gene id XLOC_005757
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 5978809 ~ 6001983 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCCCTCTTTGAGCCTCCACTGGACCCAGAGCTGCCGGCCCTGGACAGTGATGGAGACTCTGATGATGGTGACGATGGAAAAGAAGATGGCAAGAAAAATAAGGGTTCCTCCGACAGTTCATCAGGAAACACCTCAGATGGAGACAGCCAAGACAGCGGCATTCACTCCAAAGTCAAGAGCAAAGACCGACCTGGCGCCCAGAGCAAAGACGGCACTCCTCGCTCCATCCAACACAAATCTGTCCCTGGGTACAAGGTCACCCGTCCTGCTTGGACATGAGTGTGGATCTGGTGGCCAAGATCAAGATGTACCCGTGGCAGTGTATGGAGTGTAAGACGTGCACCGTGTGTCAGCAGCCCCATCATGAGGAGGAGATGATGTTCTGTGATAAGTGTGATCGAGGCTTTCACACTTTCTGTGTGGGCATGGACTCCATTCCTATGGGTTGCTGGGTCTGCGATTTATGCAGCAAAGACATTTCAACACCTCAGAAGAAAGGACAAACAAAAACACCAAAAAAGGCCAAATAACTTGCAAAAAATGGACCCAATTTTAGACCATGCTTttgatttattcatatttttctattatttgAATAAGTCTGTATGTGTTTTGTATGTCGCATTAATCTGTTATTTTGTAGCTGATTTTTTACACGCCTGTTTCTCTGTTGATTATgcttttttattgatttgttaaataaatttgaaaccTTTTTTTGT

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0007399 nervous system development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0071564 npBAF complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko05225 Hepatocellular carcinoma

ZFIN:

id description
ZDB-GENE-040426-1573 Predicted to enable histone binding activity and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within nervous system development. Predicted to be located in nucleus. Predicted to be part of npBAF complex. Orthologous to human PHF10 (PHD finger protein 10).

Ensembl:

ensembl_id ENSDART00000172165

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013554 lncRNA upstream 411663 5568968 ~ 5574113 (+) False XLOC_005756
TCONS_00011386 lncRNA upstream 411663 5569911 ~ 5574113 (+) False XLOC_005756
TCONS_00013555 lncRNA upstream 411663 5570368 ~ 5574113 (+) True XLOC_005756
TCONS_00013553 lncRNA upstream 427255 5489258 ~ 5558521 (+) True XLOC_005755
TCONS_00013381 lncRNA upstream 521895 5453124 ~ 5463881 (+) True XLOC_005754
TCONS_00011392 lncRNA downstream 140143 6142124 ~ 6144821 (+) True XLOC_005759
TCONS_00013382 lncRNA downstream 836620 6838601 ~ 6882524 (+) True XLOC_005765
TCONS_00013383 lncRNA downstream 1047262 7049243 ~ 7050779 (+) False XLOC_005766
TCONS_00013384 lncRNA downstream 1047280 7049261 ~ 7054949 (+) False XLOC_005766
TCONS_00013385 lncRNA downstream 1047388 7049369 ~ 7050268 (+) False XLOC_005766
TCONS_00011381 mRNA upstream 956812 5004924 ~ 5028964 (+) False XLOC_005750
TCONS_00011382 mRNA upstream 957543 5005039 ~ 5028233 (+) False XLOC_005750
TCONS_00011384 mRNA upstream 959555 5017864 ~ 5026221 (+) True XLOC_005750
TCONS_00011383 mRNA upstream 968054 5013572 ~ 5017722 (+) False XLOC_005750
TCONS_00011380 mRNA upstream 985037 4995433 ~ 5000739 (+) True XLOC_005749
TCONS_00011390 mRNA downstream 84749 6086730 ~ 6110023 (+) False XLOC_005758
TCONS_00011391 mRNA downstream 90154 6092135 ~ 6125334 (+) True XLOC_005758
TCONS_00011393 mRNA downstream 186778 6188759 ~ 6205567 (+) False XLOC_005760
TCONS_00011394 mRNA downstream 187222 6189203 ~ 6204676 (+) True XLOC_005760
TCONS_00011395 mRNA downstream 217570 6219551 ~ 6239216 (+) True XLOC_005761
TCONS_00011360 other upstream 2019521 3962767 ~ 3966255 (+) True XLOC_005731
TCONS_00011338 other upstream 3152569 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011320 other upstream 3599243 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011310 other upstream 4220154 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011289 other upstream 5136350 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011399 other downstream 412303 6414284 ~ 6414400 (+) True XLOC_005764
TCONS_00011412 other downstream 1379537 7381518 ~ 7381633 (+) True XLOC_005774
TCONS_00011427 other downstream 2304686 8306667 ~ 8317874 (+) True XLOC_005783
TCONS_00011428 other downstream 2537286 8539267 ~ 8539381 (+) True XLOC_005784
TCONS_00011467 other downstream 3448845 9450826 ~ 9464509 (+) False XLOC_005807

Expression Profile

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