XLOC_005754


Basic Information

Item Value
gene id XLOC_005754
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 5453112 ~ 5463881 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013552
cacaaacacacacagtggatTCCTTTATACCAGCCCTGCGCTTTTGTTTTGAGCCGAAGAACGTGTTGCCTTTTCCCCCCTCCCTTCTGCTTTCTTCCCCTctccttttttcctttctttcttttctttctccaGCGCCTAGCAGTGTTCTCGTTCCGCAGCAGGTAGTGGCTGAGAGCAGCAGGATTCTGGGAGATTGTAAGAGAACGCCTTAATGAGCTGAAGGCCTCCACGGCTGGAAacaaatgtatgcaaatgagatgcacaacccaaaaaaaaaaagaggaaggatGGTGGTCCAAGAAGAGAAGACGAACTGCAGCTGACTGAGTCTCCCCCCCTCCCCAAATCCAGCAACCAGGATGAGCTCTgctatctctctctcttctgCGATCTGTGCCTGGCTTTCATTTGCCCTCCCCGCAACAATGAAACGCGCCATGTATTGGGATCCATTCCTCTGtccgccaacgtaactggacaaattggtaacagcgggaaagccatcaatattgagggaaGCGTCTTCAAGAGAAAAGGCTGAGCTGCGTAGGTGAGTTTCACCGTCTGATGAGGCGTGGGGTCTCCACAGGGTCAGACACACCATGACACCTCCACCATCTGCCCACCTCCCTTcccatcacacacacatgcacatcacCTCCCTATAGCATTGCCACAAATACAATCTGCACTGTACAGTGTGCGTTAAAACACTGGGAGGAACTGAGGCTGTTTTTCTTGTGAATATAATCAGTGAGATTATTCTGGGAGTGAAGGTTGCTGCTCTGAGAGCTGCCCAGATGCTGTCAATAGAGTTTTGCTTTGGGCAATGTTTGAGTTATGATTTGGGGAGATTACCTGATTGGCTATTTCCTTTTAAAGGCTGTTCACCTTAAAGACAAAATGCTGATTGAGTGTTTGTAATTGTCAAAACAGAAATGACTGAAGATAGGTTTGAAAATGATGCGTGAGTGGATGAATAATCACATTTGTGACACTGGAGCACAATTTCTTGTGTTGGATAATTTTATACTTTTGCCAATAGCCAAAAACACaatgtacaattgaagtcagaattactaaactcctgaattattacccccctcccccctagtttatttattagttaagattttttcaacacatctcatttctaaacataatagttttaataactcatttctaaaaactgatttatttttatctttgccataatgacagtaaataatatttgactaaatatttttcaagacacttctataaaggcttaactaggttatttaggttaactaggcaggttaggctaattaggcaagttattgtttaaggacgtttttttctgtagactaccgaaaaaaaaaatagcttaagggggctaataattttttccccaaaatagtttttaaaaaaataaaaactgcttttattcta
>TCONS_00013381
cagtggatTCCTTTATACCAGCCCTGCGCTTTTGTTTTGAGCCGAAGAACGTGTTGCCTTTTCCCCCCTCCCTTCTGCTTTCTTCCCCTctccttttttcctttctttcttttctttctccaGCGCCTAGCAGTGTTCTCGTTCCGCAGCAGGTAGTGGCTGAGAGCAGCAGGATTCTGGGAGATTGTAAGAGAACGCCTTAATGAGCTGAAGGCCTCCACGGCTGGAAacaaatgtatgcaaatgagatgcacaacccaaaaaaaaaaagaggaaggatGGTGGTCCAAGAAGAGAAGACGAACTGCAGCTGACTGAGTCTCCCCCCCTCCCCAAATCCAGCAACCAGGATGAGCTCTgctatctctctctcttctgCGATCTGTGCCTGGCTTTCATTTGCCCTCCCCGCAACAATGAAACGCGCCATGTATTGGGATCCATTCCTCTGggaaGCGTCTTCAAGAGAAAAGGCTGAGCTGCGTAGGTGAGTTTCACCGTCTGATGAGGCGTGGGGTCTCCACAGGGTCAGACACACCATGACACCTCCACCATCTGCCCACCTCCCTTcccatcacacacacatgcacatcacCTCCCTATAGCATTGCCACAAATACAATCTGCACTGTACAGTGTGCGTTAAAACACTGGGAGGAACTGAGGCTGTTTTTCTTGTGAATATAATCAGTGAGATTATTCTGGGAGTGAAGGTTGCTGCTCTGAGAGCTGCCCAGATGCTGTCAATAGAGTTTTGCTTTGGGCAATGTTTGAGTTATGATTTGGGGAGATTACCTGATTGGCTATTTCCTTTTAAAGGCTGTTCACCTTAAAGACAAAATGCTGATTGAGTGTTTGTAATTGTCAAAACAGAAATGACTGAAGATAGGTTTGAAAATGATGCGTGAGTGGATGAATAATCACATTTGTGACACTGGAGCACAATTTCTTGTGTTGGATAATTTTATACTTTTGCCAATAGCCAAAAACACaatgtacaattgaagtcagaattactaaactcctgaattattacccccctcccccctagtttatttattagttaagattttttcaacacatctcatttctaaacataatagttttaataactcatttctaaaaactgatttatttttatctttgccataatgacagtaaataatatttgactaaatatttttcaagacacttctataaaggcttaactaggttatttaggttaactaggcaggttaggctaattaggcaagttattgtttaaggacgtttttttctgtagactaccgaaaaaaaaaatagcttaagggggctaataattttttccccaaaatagtttttaaaaaaataaaaactgcttttattctagtcgaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtggaaatttccttgctctgttaaacataatttgggaaatattaaaaaactaaaaaactatttcaaagggggtttaataatttaaaacatttgatttcaactgtatatgagtcagaattattgatttttatttttctaaaaatctCCCCCTTATTGAATATTAAGGGCATATTCATTCAAACCTGCAACTTCTGCTGTCATTcactcacatttatttatttatttttttaaactcgtTCGAATTTCATTCTTCTGATGAACACCCTTGaacacttttgctgcttgttcaaactacttatttaaaagagCTGAATCGTCTGTTGAGTCTACTCAATTGTTgagtttttgggggacaacttaactgttttatgttcaatccacttcaatttgtaaaaacaaaatactaatttaattaacttgatcaatttgtgttgggacaacatgaaggaattgtgtggaacccagcattttttttgcagtgaaaacaaatgaagatttttcttttaactattctatggaagtcaattgttacagctttctacaaagtatcttcttttgtagtcaacaaattaaag

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0022610 biological adhesion biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0007411 axon guidance biological_process
GO:0007414 axonal defasciculation biological_process
GO:0031175 neuron projection development biological_process
GO:0007155 cell adhesion biological_process
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0005539 glycosaminoglycan binding molecular_function
GO:0008201 heparin binding molecular_function
GO:1901681 sulfur compound binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013552 False 1434 lncRNA 0.41 4 5453112 5463250
TCONS_00013381 True 1999 lncRNA 0.37 3 5453124 5463881

Neighbor

gene id symbol gene type direction distance location
XLOC_005753 NA coding upstream 41655 5406150 ~ 5411457 (+)
XLOC_005752 CR788226.1 coding upstream 51892 5397541 ~ 5401220 (+)
XLOC_005751 NA coding upstream 323743 5123430 ~ 5129369 (+)
XLOC_005750 psap coding upstream 424148 5004924 ~ 5028964 (+)
XLOC_005749 mrps6 coding upstream 452373 4995433 ~ 5000739 (+)
XLOC_005755 NA coding downstream 25377 5489258 ~ 5558521 (+)
XLOC_005756 NA coding downstream 105087 5568968 ~ 5574113 (+)
XLOC_005757 phf10 coding downstream 514928 5978809 ~ 6001983 (+)
XLOC_005758 fam120b coding downstream 622849 6086730 ~ 6125334 (+)
XLOC_005759 FP089536.1 coding downstream 678243 6142124 ~ 6144821 (+)
XLOC_005747 NA non-coding upstream 731780 4711269 ~ 4721332 (+)
XLOC_005745 NA non-coding upstream 786191 4641305 ~ 4666921 (+)
XLOC_005764 CU929430.1 non-coding downstream 950403 6414284 ~ 6414400 (+)
XLOC_005765 NA non-coding downstream 1374720 6838601 ~ 6882524 (+)

Expression


Co-expression Network