RNA id: TCONS_00013381


Basic Information

Item Value
RNA id TCONS_00013381
length 1999
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id XLOC_005754
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 5453112 ~ 5463881 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagtggatTCCTTTATACCAGCCCTGCGCTTTTGTTTTGAGCCGAAGAACGTGTTGCCTTTTCCCCCCTCCCTTCTGCTTTCTTCCCCTctccttttttcctttctttcttttctttctccaGCGCCTAGCAGTGTTCTCGTTCCGCAGCAGGTAGTGGCTGAGAGCAGCAGGATTCTGGGAGATTGTAAGAGAACGCCTTAATGAGCTGAAGGCCTCCACGGCTGGAAacaaatgtatgcaaatgagatgcacaacccaaaaaaaaaaagaggaaggatGGTGGTCCAAGAAGAGAAGACGAACTGCAGCTGACTGAGTCTCCCCCCCTCCCCAAATCCAGCAACCAGGATGAGCTCTgctatctctctctcttctgCGATCTGTGCCTGGCTTTCATTTGCCCTCCCCGCAACAATGAAACGCGCCATGTATTGGGATCCATTCCTCTGggaaGCGTCTTCAAGAGAAAAGGCTGAGCTGCGTAGGTGAGTTTCACCGTCTGATGAGGCGTGGGGTCTCCACAGGGTCAGACACACCATGACACCTCCACCATCTGCCCACCTCCCTTcccatcacacacacatgcacatcacCTCCCTATAGCATTGCCACAAATACAATCTGCACTGTACAGTGTGCGTTAAAACACTGGGAGGAACTGAGGCTGTTTTTCTTGTGAATATAATCAGTGAGATTATTCTGGGAGTGAAGGTTGCTGCTCTGAGAGCTGCCCAGATGCTGTCAATAGAGTTTTGCTTTGGGCAATGTTTGAGTTATGATTTGGGGAGATTACCTGATTGGCTATTTCCTTTTAAAGGCTGTTCACCTTAAAGACAAAATGCTGATTGAGTGTTTGTAATTGTCAAAACAGAAATGACTGAAGATAGGTTTGAAAATGATGCGTGAGTGGATGAATAATCACATTTGTGACACTGGAGCACAATTTCTTGTGTTGGATAATTTTATACTTTTGCCAATAGCCAAAAACACaatgtacaattgaagtcagaattactaaactcctgaattattacccccctcccccctagtttatttattagttaagattttttcaacacatctcatttctaaacataatagttttaataactcatttctaaaaactgatttatttttatctttgccataatgacagtaaataatatttgactaaatatttttcaagacacttctataaaggcttaactaggttatttaggttaactaggcaggttaggctaattaggcaagttattgtttaaggacgtttttttctgtagactaccgaaaaaaaaaatagcttaagggggctaataattttttccccaaaatagtttttaaaaaaataaaaactgcttttattctagtcgaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtggaaatttccttgctctgttaaacataatttgggaaatattaaaaaactaaaaaactatttcaaagggggtttaataatttaaaacatttgatttcaactgtatatgagtcagaattattgatttttatttttctaaaaatctCCCCCTTATTGAATATTAAGGGCATATTCATTCAAACCTGCAACTTCTGCTGTCATTcactcacatttatttatttatttttttaaactcgtTCGAATTTCATTCTTCTGATGAACACCCTTGaacacttttgctgcttgttcaaactacttatttaaaagagCTGAATCGTCTGTTGAGTCTACTCAATTGTTgagtttttgggggacaacttaactgttttatgttcaatccacttcaatttgtaaaaacaaaatactaatttaattaacttgatcaatttgtgttgggacaacatgaaggaattgtgtggaacccagcattttttttgcagtgaaaacaaatgaagatttttcttttaactattctatggaagtcaattgttacagctttctacaaagtatcttcttttgtagtcaacaaattaaag

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0022610 biological adhesion biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0007411 axon guidance biological_process
GO:0007414 axonal defasciculation biological_process
GO:0031175 neuron projection development biological_process
GO:0007155 cell adhesion biological_process
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0005539 glycosaminoglycan binding molecular_function
GO:0008201 heparin binding molecular_function
GO:1901681 sulfur compound binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013551 lncRNA upstream 41667 5406150 ~ 5411457 (+) True XLOC_005753
TCONS_00011385 lncRNA upstream 51904 5397541 ~ 5401220 (+) False XLOC_005752
TCONS_00013550 lncRNA upstream 51904 5399834 ~ 5401220 (+) True XLOC_005752
TCONS_00013549 lncRNA upstream 323755 5123430 ~ 5129369 (+) True XLOC_005751
TCONS_00013548 lncRNA upstream 731792 4711269 ~ 4721332 (+) True XLOC_005747
TCONS_00013553 lncRNA downstream 25377 5489258 ~ 5558521 (+) True XLOC_005755
TCONS_00013554 lncRNA downstream 105087 5568968 ~ 5574113 (+) False XLOC_005756
TCONS_00011386 lncRNA downstream 106030 5569911 ~ 5574113 (+) False XLOC_005756
TCONS_00013555 lncRNA downstream 106487 5570368 ~ 5574113 (+) True XLOC_005756
TCONS_00011392 lncRNA downstream 678243 6142124 ~ 6144821 (+) True XLOC_005759
TCONS_00011381 mRNA upstream 424160 5004924 ~ 5028964 (+) False XLOC_005750
TCONS_00011382 mRNA upstream 424891 5005039 ~ 5028233 (+) False XLOC_005750
TCONS_00011384 mRNA upstream 426903 5017864 ~ 5026221 (+) True XLOC_005750
TCONS_00011383 mRNA upstream 435402 5013572 ~ 5017722 (+) False XLOC_005750
TCONS_00011380 mRNA upstream 452385 4995433 ~ 5000739 (+) True XLOC_005749
TCONS_00011387 mRNA downstream 514928 5978809 ~ 6001983 (+) False XLOC_005757
TCONS_00011388 mRNA downstream 514943 5978824 ~ 5988338 (+) False XLOC_005757
TCONS_00011390 mRNA downstream 622849 6086730 ~ 6110023 (+) False XLOC_005758
TCONS_00011391 mRNA downstream 628254 6092135 ~ 6125334 (+) True XLOC_005758
TCONS_00011393 mRNA downstream 724878 6188759 ~ 6205567 (+) False XLOC_005760
TCONS_00011360 other upstream 1486869 3962767 ~ 3966255 (+) True XLOC_005731
TCONS_00011338 other upstream 2619917 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011320 other upstream 3066591 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011310 other upstream 3687502 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011289 other upstream 4603698 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011389 other downstream 521895 5985776 ~ 6001981 (+) True XLOC_005757
TCONS_00011399 other downstream 950403 6414284 ~ 6414400 (+) True XLOC_005764
TCONS_00011412 other downstream 1917637 7381518 ~ 7381633 (+) True XLOC_005774
TCONS_00011427 other downstream 2842786 8306667 ~ 8317874 (+) True XLOC_005783
TCONS_00011428 other downstream 3075386 8539267 ~ 8539381 (+) True XLOC_005784

Expression Profile

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