XLOC_005755


Basic Information

Item Value
gene id XLOC_005755
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 5489258 ~ 5558521 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013553
TTGTCCATTAGGGCTTCATGTTCACACCTCATATTACCGCGTTCGTGTAACTTctgttattataattaattacaatACAAAACTAATGTAATTACGTGCAACTTACAAAATAACCTGTTCATTTGTGTTGTTCAGAACTTAATTGCTCTGTGGACACTGCAGTGAAAGGCGTGACCCAAGGATGAGATAAACCTGAAGACCTAGTCTTAAAATGTCTCAAATTAATCCTTGGATGAATATAGGTGGTTCATATAACCATGAAGTTTGATTCAAGCGCCATCATAAGACCCACCAGTGTCACATTGTACTATTTTTGGTTCCGGCTTCATCTAGATAGCACAACAAAAcggactgagagagagagagagaggaagagagagagagagagagagtttttatATGCCTCATCAAACAAGATTAGCAAGGACACTTGAACAAGCTCACTAAAATACTCAAGCTCTGCTGGGAAATACTTTGGAAGCACAAGATTCACACATGAACTTTGCCCAGTGGATTGCAACCAAAAACTAAATCTGTTCAGGacacttgtttatttgtttacccaAGCTTGTTGATAAGGCAAAGATCTTCAATGTTGATAACAGACCACGTGGCTgttggtgcaaaaaaaaaaaaaaaaaaaacattagctctTCTCAAATGAATGGATGTGGTAATGGCATgcacagaaacaaaaaaaaggaGGGTGAGCGCTAGAACAGTCCAATCCCCCAAACACCTCCTTTAACAAATCTTGCAAAGCAAAATGGAGCAAAATTGGGGAGGGGGGAATAATTGCTGgcgaagaaaaaaaatctgcttggtTTTGCTCCACAGAGAAAGCGAAATCTCTTAAAATGGCCTGTGGGTGAGATCTTGTTTAAAACCAGTCGAGTCACCCTTAATGGCACTGTAGGATAATCACACATCTCCTTTAATTACACTGGCTTTCACATCGCTgcctaaaaaaaaactttgaagatCCTCAAGCTTAATTTCTAAAAAATACAAAGCTGACAGTTGTCTTCgatagaaaaaaaagtgtttaatgaAGAGAACAAAAATTTTATAATTGCAAAAGTATTAGAGCAAGCATAAAGAATAGAATTTGGACTGAAAGTTACACTTAGCATGACACAATGATTaatctttacactgtaaaacccaaaaagttaaggtaactcaaaccattcgaggaaaccgattgcaacaaacaattcaagttcaaaaactaatttatatgagtactgtgaacttactccatttaagttgtagttagaggtatttaattaactcattgccTTCAACAATAAGTTTGAAACTAACTACTGTgagcttaatccatttgagtaaaataagcaatttgagcacagtaaaatccaataaatgaagagaactcaaacagaCTAAGtacagtaaaactcaataagttaaggcaactcaaaccatttgaggaaactgattgcaacaaactatttgagtttaaaaaaaatatttatatgagtactgtgaacttactccttGTAAGTTGtagtaata

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0099172 presynapse organization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0098953 receptor diffusion trapping biological_process
GO:0098970 postsynaptic neurotransmitter receptor diffusion trapping biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0001941 postsynaptic membrane organization biological_process
GO:0099054 presynapse assembly biological_process
GO:0099628 neurotransmitter receptor diffusion trapping biological_process
GO:0099634 postsynaptic specialization membrane cellular_component
GO:0098839 postsynaptic density membrane cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0099572 postsynaptic specialization cellular_component
GO:0098794 postsynapse cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013553 True 1539 lncRNA 0.36 2 5489258 5558521

Neighbor

gene id symbol gene type direction distance location
XLOC_005754 NA coding upstream 25377 5453112 ~ 5463881 (+)
XLOC_005753 NA coding upstream 77801 5406150 ~ 5411457 (+)
XLOC_005752 CR788226.1 coding upstream 88038 5397541 ~ 5401220 (+)
XLOC_005751 NA coding upstream 359889 5123430 ~ 5129369 (+)
XLOC_005750 psap coding upstream 460294 5004924 ~ 5028964 (+)
XLOC_005756 NA coding downstream 10447 5568968 ~ 5574113 (+)
XLOC_005757 phf10 coding downstream 420288 5978809 ~ 6001983 (+)
XLOC_005758 fam120b coding downstream 528209 6086730 ~ 6125334 (+)
XLOC_005759 FP089536.1 coding downstream 583603 6142124 ~ 6144821 (+)
XLOC_005760 ppm1g coding downstream 630238 6188759 ~ 6205567 (+)
XLOC_005747 NA non-coding upstream 767926 4711269 ~ 4721332 (+)
XLOC_005764 CU929430.1 non-coding downstream 855763 6414284 ~ 6414400 (+)
XLOC_005765 NA non-coding downstream 1280080 6838601 ~ 6882524 (+)
XLOC_005770 NA non-coding downstream 1715950 7274471 ~ 7317333 (+)

Expression


Co-expression Network