Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00011383 |
| length | 496 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 4 |
| gene id | XLOC_005750 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 5004924 ~ 5028964 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0019216 | regulation of lipid metabolic process | biological_process |
| GO:0007193 | adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway | biological_process |
| GO:0006629 | lipid metabolic process | biological_process |
| GO:0006665 | sphingolipid metabolic process | biological_process |
| GO:0005764 | lysosome | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-020108-1 | Predicted to be involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway and regulation of lipid metabolic process. Predicted to act upstream of or within sphingolipid metabolic process. Predicted to be located in extracellular region and lysosome. Predicted to be active in extracellular space. Is expressed in blood; extension; peripheral olfactory organ; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in atypical Gaucher's disease due to saposin c deficiency and combined saposin deficiency. Orthologous to several human genes including PSAP (prosaposin). |
| ensembl_id | ENSDART00000162425 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013548 | lncRNA | upstream | 292240 | 4711269 ~ 4721332 (+) | True | XLOC_005747 |
| TCONS_00013547 | lncRNA | upstream | 346651 | 4641305 ~ 4666921 (+) | False | XLOC_005745 |
| TCONS_00013380 | lncRNA | upstream | 346651 | 4664858 ~ 4666921 (+) | True | XLOC_005745 |
| TCONS_00013379 | lncRNA | upstream | 459902 | 4553392 ~ 4553670 (+) | True | XLOC_005744 |
| TCONS_00013378 | lncRNA | upstream | 582868 | 4425021 ~ 4430704 (+) | True | XLOC_005741 |
| TCONS_00013549 | lncRNA | downstream | 105708 | 5123430 ~ 5129369 (+) | True | XLOC_005751 |
| TCONS_00011385 | lncRNA | downstream | 379819 | 5397541 ~ 5401220 (+) | False | XLOC_005752 |
| TCONS_00013550 | lncRNA | downstream | 382112 | 5399834 ~ 5401220 (+) | True | XLOC_005752 |
| TCONS_00013551 | lncRNA | downstream | 388428 | 5406150 ~ 5411457 (+) | True | XLOC_005753 |
| TCONS_00013552 | lncRNA | downstream | 435390 | 5453112 ~ 5463250 (+) | False | XLOC_005754 |
| TCONS_00011380 | mRNA | upstream | 12833 | 4995433 ~ 5000739 (+) | True | XLOC_005749 |
| TCONS_00011376 | mRNA | upstream | 43885 | 4871886 ~ 4969687 (+) | False | XLOC_005748 |
| TCONS_00011384 | mRNA | downstream | 142 | 5017864 ~ 5026221 (+) | True | XLOC_005750 |
| TCONS_00011387 | mRNA | downstream | 961087 | 5978809 ~ 6001983 (+) | False | XLOC_005757 |
| TCONS_00011388 | mRNA | downstream | 961102 | 5978824 ~ 5988338 (+) | False | XLOC_005757 |
| TCONS_00011390 | mRNA | downstream | 1069008 | 6086730 ~ 6110023 (+) | False | XLOC_005758 |
| TCONS_00011391 | mRNA | downstream | 1074413 | 6092135 ~ 6125334 (+) | True | XLOC_005758 |
| TCONS_00011360 | other | upstream | 1047317 | 3962767 ~ 3966255 (+) | True | XLOC_005731 |
| TCONS_00011338 | other | upstream | 2180365 | 2833092 ~ 2833207 (+) | True | XLOC_005718 |
| TCONS_00011320 | other | upstream | 2627039 | 2386413 ~ 2386533 (+) | True | XLOC_005710 |
| TCONS_00011310 | other | upstream | 3247950 | 1765507 ~ 1765622 (+) | True | XLOC_005701 |
| TCONS_00011289 | other | upstream | 4164146 | 844143 ~ 849426 (+) | False | XLOC_005684 |
| TCONS_00011389 | other | downstream | 968054 | 5985776 ~ 6001981 (+) | True | XLOC_005757 |
| TCONS_00011399 | other | downstream | 1396562 | 6414284 ~ 6414400 (+) | True | XLOC_005764 |
| TCONS_00011412 | other | downstream | 2363796 | 7381518 ~ 7381633 (+) | True | XLOC_005774 |
| TCONS_00011427 | other | downstream | 3288945 | 8306667 ~ 8317874 (+) | True | XLOC_005783 |
| TCONS_00011428 | other | downstream | 3521545 | 8539267 ~ 8539381 (+) | True | XLOC_005784 |
