XLOC_005748 (micu1)


Basic Information

Item Value
gene id XLOC_005748
gene name micu1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 4871886 ~ 4969687 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011376
gaagaagaagaagaagaagaagaagaagaacggAGTGTTTACAAACTGATGGAAGATCCCACAGACTGAGCAGATAAGGGGAGGCGGAGGCTTGACGTTTgctgtgggtgtgtttgtgtgtgttcggCCTCCGTAGACGCGGAACTTCAGCGCAGAAAGTCAACGCGACTAACGTTAAAGCAGAATCGTAGGGGGAATCTGCAGTTCTTACAGAAAAAACATCTTTCCTGCAGGACTTTATCTGACGTTGCCTTAAGTGTCTGATATGTACCGCTTGCGGGCACTGACGGCTGCCACCGTCGGGATGGTGCAGTTGACTAGACGGCATCACACCGGGGCTTTCCGTTCCTATCAGCGCCGTAGACTGATGTTGGCCGCCCTGGCGGGGGTGACGGGCATCTCAGCCAGCGCTGGACTGATGTGGACAAGAGCGTATGCGGAGGCGGGCTCTTCAGTTAAACACGAGGAGCAGATGCGAGAGGAGGAGCCTCTGAAAGATGTCGCGGAGGAGGCGGAGTCTGACGGCGCTCTAGAGTCCAGCAGCGGTGAGGATGAAGACGAGGCGGGCTCagaagagaagaagaagaaacagagAATCGGCTTCCGCGACCGCAAGGTGATGGAGTATGAGAACAGGATCAGAGCTTACTCTACCCCTGACAAGATATTTCGTTACTTTGCCACCCTGAAGATCATCAATGAACACGGAGACGCAGAAGTGTACATGACACCGCAGGACTTTGTGCGCTCCATCACACCAAACGAGAAACAGCCAGAGAACCTTGGTCTGGATCAGTTTATGGTGAAACGCTATGATGGAAAGGACTTCTGGCAGAAGATCTCTCAGGACCGAGAAAAGTTTGCAGACGAGGACAGCATTTTCTACACTCTGGGGGAGTGTGGACTCATCTCTTTCTCCGACTACATCTTCCTCACGACTGTCCTCTCTACTCCTCAGAGGAACTTTGAAATTGCCTTCAAGATGTTTGACTTGAACGGAGACGGAGAGGTTGACCTTGAAGAGTTTGAGCAAgtTCAGAGTATCATTCGCTCTCAGACCAGTATGGGGATGAGACACCGAGATCGCTCCACTACAGGAAACACTCTGAAAACCGGCGGCTGCAGCTCAGCTCTCACCACCTACTTTTTTGGGGCTGATCTGAAGGGCAAACTCACTATAAGCAGCTTCCTGGAGTTCCAGAGGAAATTACAGCATGATGTGCTTAAACTGGAGTTTGAAAGGAATGATCCGGTGGACGGCAGGATCACAGAGAAGCAGTTTGGTGGAATGCTGCTGGCCTACAGCGGAGTTCAGTCCCGCAAGCTCAAACAGATGCAGAAAAACCTCAAAAGAATGTTCAAGGATGCTCAGGGCATCACTTTCGAGGAAGTGGAGAATTTCTTCACCTTCCTTAAGAATGTCAATGATGTTGACACTGCATTGAGTTTCTACCACATGGCTGGCGCCTCTATAGATAAAGCCACCATGAAGCAGGTCGCCCGCACTGTGGCAAAAGTGGAGCTGTCGGACCATGTGTGTGATGTAGTGTTCGCACTGTTCGACTGCGatggaaacggGGAACTGAGCAATAAAGAGTTTATCGCCATCATGAAACAGCGGCTGATGCGTGGACTGGAGAAGCCCAAAGATATGGGTTTCACCCGGCTGGTGCGCGCCATGTGGAAATGTGCCCAGGACACTGCCTGGGACTTTGCCATGCCAAAACAGCAGTAAAACCGAGATGGCGTCCCCTCATATGGAGTATAAATAATCATTAAGGGATGAACACTTGGAAGACGCATGCTATATAGTGTGTACTGCTGTTCACCTGCAGCTCTACTCAAGCTGAGCTTGCCATCTAATATTTATTCCTTGCTGTTTGCCAGGTTTGGGGTTGAATGTGCAATTCTGCATACGCTAGAATGTGGACGGCATGTGAAAACACAACAGCAGGAGGTGGCCATCCAGTGCTGCGAGTTCCTATTTGATATGAATGTTGCATTATTCAACTTTAATTTTATACCAGTCTCAATCGCAGCAGAAATCTCTTTATTTTACACTCCTTGAATGTGTCCATGTGTCTTACAGCTTACTGCAGAAACCAATTATTAGAGTACTGCTGAacagcttttttttgtttgttataatcTCTCTCtctacatatgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgttgtcacgatactggaattctaAAACATCCAGTACTGCAactttaaaaacgtccatttcccaccAACATTTGAGTGCGTACTTAAACACCACTGACTATGTTCACGTGCTGTAATGACTGATTggtcgtgaaggtcatcagttcgcCGAACTCACTGCTATTTACTGAATGTAACTACAAATATAGGGACACTGGAGCTTTTAAAATCCACGATTGATCAGCTGgtgtttataagctgacatacgagtgatctgctgatgaatcgactgatcttcatggctttaaaacactcctgcgtccctgtatctgtgtttacatttAGTAAGcagtggtgagttcggtgaactgatgaccttcacggccaatcacagacatttctgttgagcatgtgaacacagtggcaagtcaacagtgcttaaatgttggCGGGGAATggacgtttgtttgtttgtattttagtaCTGATTGGTattgaattccagtatcatgacaacactaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacatcaatCATTAATATTTTGAAAATCTCATTGTTAAATGACTTTATTAAAGAATGATGCGGAAAGAATTACACTATTAAAACGTTTTGATATA
>TCONS_00011377
AAATATTTGAATTGGTGTCATTTGTGTCACTCGAGCAGATATTTGCATATAGATGTGATTCTCTTTCTGGATTAAATGTATTACTTGCATAGGAATCACCCTGTTTTTCTATGTTTTGCAGTATGTACCGCTTGCGGGCACTGACGGCTGCCACCGTCGGGATGGTGCAGTTGACTAGACGGCATCACACCGGGGCTTTCCGTTCCTATCAGCGCCGTAGACTGATGTTGGCCGCCCTGGCGGGGGTGACGGGCATCTCAGCCAGCGCTGGACTGATGTGGACAAGAGCGTATGCGGAGGCGGGCTCTTCAGTTAAACACGAGGAGCAGATGCGAGAGGAGGAGCCTCTGAAAGATGTCGCGGAGGAGGCGGAGTCTGACGGCGCTCTAGAGTCCAGCAGCGGTGAGGATGAAGACGAGGCGGGCTCagaagagaagaagaagaaacagagAATCGGCTTCCGCGACCGCAAGGTGATGGAGTATGAGAACAGGATCAGAGCTTACTCTACCCCTGACAAGATATTTCGTTACTTTGCCACCCTGAAGATCATCAATGAACACGGAGACGCAGAAGTGTACATGACACCGCAGGACTTTGTGCGCTCCATCACACCAAACGAGAAACAGCCAGAGAACCTTGGTCTGGATCAGTTTATGGTGAAACGCTATGATGGAAAGGACTTCTGGCAGAAGATCTCTCAGGACCGAGAAAAGTTTGCAGACGAGGACAGCATTTTCTACACTCTGGGGGAGTGTGGACTCATCTCTTTCTCCGACTACATCTTCCTCACGACTGTCCTCTCTACTCCTCAGAGGAACTTTGAAATTGCCTTCAAGATGTTTGACTTGAACGGAGACGGAGAGGTTGACCTTGAAGAGTTTGAGCAAgtTCAGAGTATCATTCGCTCTCAGACCAGTATGGGGATGAGACACCGAGATCGCTCCACTACAGGAAACACTCTGAAAACCGGCGGCTGCAGCTCAGCTCTCACCACCTACTTTTTTGGGGCTGATCTGAAGGGCAAACTCACTATAAGCAGCTTCCTGGAGTTCCAGAGGAAATTACAGCATGATGTGCTTAAACTGGAGTTTGAAAGGAATGATCCGGTGGACGGCAGGATCACAGAGAAGCAGTTTGGTGGAATGCTGCTGGCCTACAGCGGAGTTCAGTCCCGCAAGCTCAAACAGATGCAGAAAAACCTCAAAAGAATGTTCAAGGATGCTCAGGGCATCACTTTCGAGGAAGTGGAGAATTTCTTCACCTTCCTTAAGAATGTCAATGATGTTGACACTGCATTGAGTTTCTACCACATGGCTGGCGCCTCTATAGATAAAGCCACCATGAAGCAGGTCGCCCGCACTGTGGCAAAAGTGGAGCTGTCGGACCATGTGTGTGATGTAGTGTTCGCACTGTTCGACTGCGatggaaacggGGAACTGAGCAATAAAGAGTTTATCGCCATCATGAAACAGCGGCTGATGCGTGGACTGGAGAAGCCCAAAGATATGGGTTTCACCCGGCTGGTGCGCGCCATGTGGAAATGTGCCCAGGACACTGCCTGGGACTTTGCCATGCCAAAACAGCAGTAA
>TCONS_00011378
TATGTACCGCTTGCGGGCACTGACGGCTGCCACCGTCGGGATGGTGCAGTTGACTAGACGGCATCACACCGGGGCTTTCCGTTCCTATCAGCGCCGTAGACTGATGTTGGCCGCCCTGGCGGGGGTGACGGGCATCTCAGCCAGCGCTGGACTGATGTGGACAAGAGCGTATGCGGAGGCGGGCTCTTCAGTTAAACACGAGGAGCAGATGCGAGAGGAGGAGCCTCTGAAAGATGTCGCGGAGGAGGCGGAGTCTGACGGCGCTCTAGAGTCCAGCAGCGGTGAGGATGAAGACGAGGCGGGCTCagaagagaagaagaagaaacagagAATCGGCTTCCGCGACCGCAAGGTGATGGAGTATGAGAACAGGATCAGAGCTTACTCTACCCCTGACAAGATATTTCGTTACTTTGCCACCCTGAAGATCATCAATGAACACGGAGACGCAGAAGTGTACATGACACCGCAGGACTTTGTGCGCTCCATCACACCAAACGAGAAACAGCCAGAGAACCTTGGTCTGGATCAGTTTATGGTGAAACGCTATGATGGAAAGAAGATCTCTCAGGACCGAGAAAAGTTTGCAGACGAGGACAGCATTTTCTACACTCTGGGGGAGTGTGGACTCATCTCTTTCTCCGACTACATCTTCCTCACGACTGTCCTCTCTACTCCTCAGAGGAACTTTGAAATTGCCTTCAAGATGTTTGACTTGAACGGAGACGGAGAGGTTGACCTTGAAGAGTTTGAGCAAgtTCAGAGTATCATTCGCTCTCAGACCAGTATGGGGATGAGACACCGAGATCGCTCCACTACAGGAAACACTCTGAAAACCGGCGGCTGCAGCTCAGCTCTCACCACCTACTTTTTTGGGGCTGATCTGAAGGGCAAACTCACTATAAGCAGCTTCCTGGAGTTCCAGAGGAAATTACAGCATGATGTGCTTAAACTGGAGTTTGAAAGGAATGATCCGGTGGACGGCAGGATCACAGAGAAGCAGTTTGGTGGAATGCTGCTGGCCTACAGCGGAGTTCAGTCCCGCAAGCTCAAACAGATGCAGAAAAACCTCAAAAGAATGTTCAAGGATGCTCAGGGCATCACTTTCGAGGAAGTGGAGAATTTCTTCACCTTCCTTAAGAATGTCAATGATGTTGACACTGCATTGAGTTTCTACCACATGGCTGGCGCCTCTATAGATAAAGCCACCATGAAGCAGGTCGCCCGCACTGTGGCAAAAGTGGAGCTGTCGGACCATGTGTGTGATGTAGTGTTCGCACTGTTCGACTGCGatggaaacggGGAACTGAGCAATAAAGAGTTTATCGCCATCATGAAACAGCGGCTGATGCGTGGACTGGAGAAGCCCAAAGATATGGGTTTCACCCGGCTGGTGCGCGCCATGTGGAAATGTGCCCAGGACACTGCCTGGGACTTTGCCATGCCAAAACAGCAGTAAAACCGAGATG
>TCONS_00011379
gaagaaacagagAATCGGCTTCCGCGACCGCAAGGTGATGGAGTATGAGAACAGGATCAGAGCTTACTCTACCCCTGACAAGATATTTCGTTACTTTGCCACCCTGAAGATCATCAATGAACACGGAGACGCAGAAGTGTACATGACACCGCAGGACTTTGTGCGCTCCATCACACCAAACGAGAAACAGCCAGAGAACCTTGGTCTGGATCAGTTTATGGTGAAACGCTATGATGGAAAGAAGATCTCTCAGGACCGAGAAAAGTTTGCAGACGAGGACAGCATTTTCTACACTCTGGGGGAGTGTGGACTCATCTCTTTCTCCGACTACATCTTCCTCACGACTGTCCTCTCTACTCCTCAGAGGAACTTTGAAATTGCCTTCAAGATGTTTGACTTGAACGGAGACGGAGAGGTTGACCTTGAAGAGTTTGAGCAAgtTCAGAGTATCATTCGCTCTCAGACCAGTATGGGGATGAGACACCGAGATCGCTCCACTACAGGAAACACTCTGAAAACCGGCGGCTGCAGCTCAGCTCTCACCACCTACTTTTTTGGGGCTGATCTGAAGGGCAAACTCACTATAAGCAGCTTCCTGGAGTTC

Function

symbol description
micu1 Predicted to enable calcium ion binding activity. Predicted to be involved in calcium import into the mitochondrion and positive regulation of mitochondrial calcium ion concentration. Predicted to act upstream of or within calcium ion transport. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Predicted to be integral component of mitochondrial membrane. Predicted to be part of uniplex complex. Is expressed in female organism; heart; and heart tube. Human ortholog(s) of this gene implicated in myopathy with extrapyramidal signs. Orthologous to human MICU1 (mitochondrial calcium uptake 1).

GO:

id name namespace
GO:0070509 calcium ion import biological_process
GO:0051560 mitochondrial calcium ion homeostasis biological_process
GO:0051561 positive regulation of mitochondrial calcium ion concentration biological_process
GO:0036444 calcium import into the mitochondrion biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0006851 mitochondrial calcium ion transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0032592 integral component of mitochondrial membrane cellular_component
GO:1990246 uniplex complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-070410-22 Predicted to enable calcium ion binding activity. Predicted to be involved in calcium import into the mitochondrion and positive regulation of mitochondrial calcium ion concentration. Predicted to act upstream of or within calcium ion transport. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Predicted to be integral component of mitochondrial membrane. Predicted to be part of uniplex complex. Is expressed in female organism; heart; and heart tube. Human ortholog(s) of this gene implicated in myopathy with extrapyramidal signs. Orthologous to human MICU1 (mitochondrial calcium uptake 1).

Ensembl:

ensembl_id ENSDARG00000063358

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011376 False 2848 mRNA 0.46 13 4871886 4969687
TCONS_00011377 False 1592 mRNA 0.51 12 4883377 4968574
TCONS_00011378 False 1469 mRNA 0.52 11 4883498 4968584
TCONS_00011379 True 604 mRNA 0.49 6 4888351 4951795

Neighbor

gene id symbol gene type direction distance location
XLOC_005747 NA coding upstream 150554 4711269 ~ 4721332 (+)
XLOC_005746 pla2g12b coding upstream 188291 4671698 ~ 4683595 (+)
XLOC_005745 NA coding upstream 204965 4641305 ~ 4666921 (+)
XLOC_005743 pde10a coding upstream 251171 4505079 ~ 4620715 (+)
XLOC_005744 NA coding upstream 318216 4553392 ~ 4553670 (+)
XLOC_005749 mrps6 coding downstream 25746 4995433 ~ 5000739 (+)
XLOC_005750 psap coding downstream 35237 5004924 ~ 5028964 (+)
XLOC_005751 NA coding downstream 153743 5123430 ~ 5129369 (+)
XLOC_005752 CR788226.1 coding downstream 427854 5397541 ~ 5401220 (+)
XLOC_005753 NA coding downstream 436463 5406150 ~ 5411457 (+)
XLOC_005739 NA non-coding upstream 462930 4398151 ~ 4408956 (+)
XLOC_005737 NA non-coding upstream 535984 4332745 ~ 4335902 (+)
XLOC_005754 NA non-coding downstream 483425 5453112 ~ 5463881 (+)
XLOC_005755 NA non-coding downstream 519571 5489258 ~ 5558521 (+)

Expression


Co-expression Network