XLOC_005746 (pla2g12b)


Basic Information

Item Value
gene id XLOC_005746
gene name pla2g12b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 4671698 ~ 4683595 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011373
CGAGGCACTATCAACACTGTCTGTTTTTTTCTGCTGCTCACTCTTTTTCCTTCGAGCCCTTCAACTTCGTAGGTCTCCCTGGACTGTACTGTAATAGGACATCATGTTTCCTCGCGCACTACCCCTGCTCCTGCTGTGTATCTCTGCAGGCTTGGCTGCGACTCTTATCCAGGCTTCAGTAGATGCGGCCTCAGTAGATTCGCCTGCTGATGAAAGCCCAGATGTTAATCAGGAGAATCAGGCAGAGCATGTTTTAATGGCAGATGCCCCTGTTGAGGGAAAACCTGCACCGAGTGCCACAGAAGAATCTGAGGACGATGATGACTGGGGGTTCGGCTCTATCCGAGGAAGTTTACAGTCAGTCAATGGCTATTTTGACTCAATACTGGAGTTGATGGGAGGCCGTGATGGTGTATGTCAGTACCGCTGCAGATATGGTAAAGCTCCTCAGCCTCGTCCTGGCTATCAGATGTCAGAACCTGATGGTTGTAGCACGTCACTGCTTGGCTTCCAGTTTGATATGGGTGTCCCAGCCATGACCAAATGTTGCAACCAGTTAGATATTTGCTACGAAACCTGTGGATCCAACAAGTACCGCTGTGACACCAAATTCCGCTGGTGCCTCCACAGCATCTGCGGTGACCTGAAGAAGAGTCTGGGCCTTATGTCCAAAGTTGAAGCATGTGAGACCTTTGCAGACACCATGTACAACACTGTGTGGACTTTGGGCTGCAGACCCTTCATGAACGGCCAAAGGGCGTCCTGCTATTGCGAAGGAGAAGAGAAGGATGAGCTCTGAAGACCAacaaaatcacaaaacacaccACCTTCAGCACATATAAACACTTCATAGCTTTAAACTATACCACACAAGGCACGAGTCACATTCAAACAAGTCACATTTCACTACAAACATTGAGTAGAAACTATTGATCGACATTAATTTGAAGTGAAATGTGACCTTCACACGTTGTGGAGATTCATCCACTAACCCTTGAACTGGTGCTATTGGATTTTGTCAGACAAGAAAAAGTTTATATGGTATATGGGTGTCGTTATCGcatatgtattgtgtgtgtgtgtgtgattgtgtatagGTTTCGCAcacagaaatctgatatatggcaatatatgcaaatttcATATATAACATACAAGTTTATATTTGAATTTCACATATAGAAAAATcaatggttcattccactgtgtcagcctctaaaataaagactaagctgaagggaaatgacTGAATATAGAAAAATAGATATCCGTTTATGTGTATATTTTAAGTTTCAACCATTTTAATTACAGATGTGTactatgcatatgtgtgtgtgtcatatatgAACACAAAATGATTGCTAATATATTTGAACCTATACGGTATGTACATGTTTGTAATTATAATGGTTGACAAACTATATatgtaaacagccatttttgCTACATACACTTGTATGTCATAtaattaatttgcatatatttccatatgTCGGATTTCTATATGGGTTGTTATATGGGAAGACAACATTTAACTTCTTATGACCATAGATGAAGCCATTAAGACGTAGAGAATTCACACAAGTATTGGTACCGaactaatatttaatatattaaggaaCTTTTGTTTGGTGATGATCTATATATCATGgtaatatttatgtaatattacTGCATTACTATTATTTTCTTCAAATGTAACTAAATGTAGAATCAGTGCTCAGCAAAAACACGCAGGAATGTTTTTCATTGTGAGTAAAGACTGAACGAAAAAGACTCGGCTGTAACATCCCTTTATTTCGCCCAGTAAAACTCTGCTAATCATATATGCAAATGAGCCatttaagcttttttatttattctgtgcTTCCATGCTTGTTAATTGTACACATTACAGTACTACAAATTAATGCAGACAAAAATGCATCTTTCTTTTCGGTTCAGGTAAGGATTATATAACAGAATAGGATTAGAAGCAGTGGAGATGAGATAGGCTTCAGCAGAGCCTCCTCTTATCAATTCATGTATGATTATTactgactacactgtaaaaatatccataaattagtgGTTTTTCGTATTTtgcgattcatgtttttatttatgcttttgagttgcattatgggatgtatgggatctttcttccaacaacgtTTAGCCTTGAAAAGTTTggtaaaagtgacttttataaacattaataatagtttaaagtgctatattgtctgggttggtgttgtatattacgctacatacaccttgtaataaactgccagcacattt
>TCONS_00011374
ACTCTTTTTCCTTCGAGCCCTTCAACTTCGTAGGTCTCCCTGGACTGTACTGTAATAGGACATCATGTTTCCTCGCGCACTACCCCTGCTCCTGCTGTGTATCTCTGCAGGCTTGGCTGCGACTCTTATCCAGGCTTCAGTAGATGCGGCCTCAGTAGATTCGCCTGCTGATGAAAGCCCAGATGTTAATCAGGAGAATCAGGCAGAGCATGTTTTAATGGCAGATGCCCCTGTTGAGGGAAAACCTGCACCGAGTGCCACAGAAGAATCTGAGGACGATGATGACTGGGGGTTCGGCTCTATCCGAGGAAGTTTACAGTCAGTCAATGGCTATTTTGACTCAATACTGGAGTTGATGGGAGGCCGTGATGGTGTATGTCAGTACCGCTGCAGATATGGTAAAGCTCCTCAGCCTCGTCCTGGCTATCAGATGTCAGAACCTGATGGTTGTAGCACGTCACTGCTTGGCTTCCAGGTACCGAATAGTTTTGATATGGGTGTCCCAGCCATGACCAAATGTTGCAACCAGTTAGATATTTGCTACGAAACCTGTGGATCCAACAAGTACCGCTGTGACACCAAATTCCGCTGGTGCCTCCACAGCATCTGCGGTGACCTGAAGAAGAGTCTGGGCCTTATGTCCAAAGTTGAAGCATGTGAGACCTTTGCAGACACCATGTACAACACTGTGTGGACTTTGGGCTGCAGACCCTTCATGAACGGCCAAAGGGCGTCCTGCTATTGCGAAGGAGAAGAGAAGGATGAGCTCTGAAGACCAacaaaatcacaaaacacaccACCTTCAGCACATATAAACACTTCATAGCTTTAAACTATACCACACAAGGCACGAGTCACATTCAAACAAGTCACATTTCACTACAAACATTGAGTAGAAACTATTGATCGACATTAATTTGAAGTGAAATGTGACCTTCACACGTTGTGGAGATTCATCCACTAACCCTTGAACTGGTGCTATTGGATTTTGTCAGACAAGAAAAAGTTTATATGGTATATGGGTGTCGTTATCGcatatgtattgtgtgtgtgtgtgtgattgtgtatagGTTTCGCAcacagaaatctgatatatggcaatatatgcaaatttcATATATAACATACAAGTTTATATTTGAATTTCACATATAGAAAAATcaatggttcattccactgtgtcagcctctaaaataaagactaagctgaagggaaatgacTGAATATAGAAAAATAGATATCCGTTTATGTGTATATTTTAAGTTTCAACCATTTTAATTACAGATGTGTactatgcatatgtgtgtgtgtcatatatgAACACAAAATGATTGCTAATATATTTGAACCTATACGGTATGTACATGTTTGTAATTATAATGGTTGACAAACTATATatgtaaacagccatttttgCTACATACACTTGTATGTCATAtaattaatttgcatatatttccatatgTCGGATTTCTATATGGGTTGTTATATGGGAAGACAACATTTAACTTCTTATGACCATAGATGAAGCCATTAAGACGTAGAGAATTCACACAAGTATTGGTACCGaactaatatttaatatattaaggaaCTTTTGTTTGGTGATGATCTATATATCATGgtaatatttatgtaatattacTGCATTACTATTATTTTCTTCAAATGTAACTAAATGTAGAATCAGTGCTCAGCAAAAACACGCAGGAATGTTTTTCATTGTGAGTAAAGACTGAACGAAAAAGACTCGGCTGTAACATCCCTTTATTTCGCCCAGTAAAACTCTGCTAATCATATATGCAAA
>TCONS_00011375
TTTTCCTTCGAGCCCTTCAACTTCGTAGGTCTCCCTGGACTGTACTGTAATAGGACATCATGTTTCCTCGCGCACTACCCCTGCTCCTGCTGTGTATCTCTGCAGGCTTGGCTGCGACTCTTATCCAGGCTTCAGTAGATGCGGCCTCAGTAGATTCGCCTGCTGATGAAAGCCCAGATGTTAATCAGGAGAATCAGGCAGAGCATGTTTTAATGGCAGATGCCCCTGTTGAGGGAAAACCTGCACCGAGTGCCACAGAAGAATCTGAGGACGATGATGACTGGGGGTTCGGCTCTATCCGAGGAAGTTTACAGTCAGTCAATGGCTATTTTGACTCAATACTGGAGTTGATGGGAGGCCGTGATGGTGTATGTCAGTACCGCTGCAGATATGGTAAAGCTCCTCAGCCTCGTCCTGGCTATCAGATGTCAGAACCTGATGGTTGTAGCACGTCACTGCTTGGCTTCCAGCATGTGAGACCTTTGCAGACACCATGTACAACACTGTGTGGACTTTGGGCTGCAGACCCTTCATGAACGGCCAAAGGGCGTCCTGCTATTGCGAAGGAGAAGAGAAGGATGAGCTCTGAAGACCAacaaaatcacaaaacacaccACCTTCAGCACATATAAACACTTCATAGCTTTAAACTATACCACACAAGGCACGAGTCACATTCAAACAAGTCACATTTCACTACAAACATTGAGTAGAAACTATTGATCGACATTAATTTGAAGTGAAATGTGACCTTCACACGTTGTGGAGATTCATCCACTAACCCTTGAACTGGTGCTATTGGATTTTGTCAGACAAGAAAAAGTTTATATGGT

Function

symbol description
pla2g12b Predicted to enable calcium ion binding activity and phospholipase A2 activity. Predicted to be involved in cholesterol homeostasis and triglyceride homeostasis. Predicted to act upstream of or within arachidonic acid secretion; lipid catabolic process; and phospholipid metabolic process. Predicted to be located in extracellular region. Is expressed in caudal fin skeleton and yolk syncytial layer. Orthologous to human PLA2G12B (phospholipase A2 group XIIB).

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0070328 triglyceride homeostasis biological_process
GO:0050482 arachidonic acid secretion biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2771 Predicted to enable calcium ion binding activity and phospholipase A2 activity. Predicted to be involved in cholesterol homeostasis and triglyceride homeostasis. Predicted to act upstream of or within arachidonic acid secretion; lipid catabolic process; and phospholipid metabolic process. Predicted to be located in extracellular region. Is expressed in caudal fin skeleton and yolk syncytial layer. Orthologous to human PLA2G12B (phospholipase A2 group XIIB).

Ensembl:

ensembl_id ENSDARG00000015662

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011373 False 2280 mRNA 0.38 4 4671698 4683595
TCONS_00011374 False 1807 mRNA 0.40 4 4671737 4683149
TCONS_00011375 True 833 mRNA 0.47 3 4671742 4682358

Neighbor

gene id symbol gene type direction distance location
XLOC_005745 NA coding upstream 4777 4641305 ~ 4666921 (+)
XLOC_005743 pde10a coding upstream 50983 4505079 ~ 4620715 (+)
XLOC_005744 NA coding upstream 118028 4553392 ~ 4553670 (+)
XLOC_005742 tbxtb coding upstream 218035 4439074 ~ 4453663 (+)
XLOC_005741 si:ch211-130h14.4 coding upstream 232658 4409294 ~ 4439040 (+)
XLOC_005747 NA coding downstream 27674 4711269 ~ 4721332 (+)
XLOC_005748 micu1 coding downstream 188291 4871886 ~ 4969687 (+)
XLOC_005749 mrps6 coding downstream 311838 4995433 ~ 5000739 (+)
XLOC_005750 psap coding downstream 321329 5004924 ~ 5028964 (+)
XLOC_005751 NA coding downstream 439835 5123430 ~ 5129369 (+)
XLOC_005739 NA non-coding upstream 262742 4398151 ~ 4408956 (+)
XLOC_005737 NA non-coding upstream 335796 4332745 ~ 4335902 (+)
XLOC_005734 NA non-coding upstream 479662 4181231 ~ 4192036 (+)
XLOC_005752 CR788226.1 non-coding downstream 713946 5397541 ~ 5401220 (+)
XLOC_005753 NA non-coding downstream 722555 5406150 ~ 5411457 (+)
XLOC_005754 NA non-coding downstream 769517 5453112 ~ 5463881 (+)

Expression


Co-expression Network