XLOC_005737


Basic Information

Item Value
gene id XLOC_005737
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 4332745 ~ 4335902 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011364
GTGTGAGGCTGTAACGCAGTGTTTTGTTTACTCCATACCCCATAGCCTCTCTGCGGTCGTCCGCCTCTGTATTCATCTGCTGGATCCGGCGGAGAGTATCTTCTCCTCGGGGACGGCCGACGGTAAGGGTCTCGGTCCGGGGGATGGCCCGGTCCAGGACGGGGCCCGAAACCACGAGACGGCGGGGGATGGCGATAACCGCCTCTGTGCGGCCTAGTACCGCGAAACATGTCGACGCTTCACTGCTGTTTCTGCGTCAGCGTCGAGTCCTTATTACCCTGGGAACGGGACTGCGATTATCCCTGCAACAGGAGTCGACTGAGAAAaccagagaggagcagaagcaggagacgaagtaatgatgataaagagcagagtttattgaataatctCATTGGAGCGTGATTCAATGCTCAGATTTCGTCTGACCAGGATAAATCCAATAAGTCTTAttataccacaagcaacagcaatggaaaattacTGCTTCACAACATTGTCCAGAGACAATAAAGACCTTGAAATGAAGACATTCTCTTATCTGTAACTCATGAAAACAAGTATCACTTAAATCCACAGTCATGCgagtataaaaaaattaattcataatttaaaGCTGGTTAAATTCAGACTgttgtcacactttatttaaaaccCCTTTTAAAAGAAATTTTGCATAATAAGTCCACTTTGGAAAAAAACTGCACCTCATATTTACCATAATCATGCAggcactttatatttattttaataatcagaaAGGCAAAGACATTGAACTTTAATAATTCAAAACAATACACTTCAGTGCTACAAATGTTTGTCCAtatcgtgtgtgtatgtatgtatgtatgtatgtatatatatatatgtatgtatatgtgtgtgtgtgcatatacacacacagttgaagtcagaattattggcgcC

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0048793 pronephros development biological_process
GO:0071599 otic vesicle development biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0001822 kidney development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0014029 neural crest formation biological_process
GO:0072001 renal system development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0001655 urogenital system development biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011364 True 927 lncRNA 0.42 2 4332745 4335902

Neighbor

gene id symbol gene type direction distance location
XLOC_005736 mea1 coding upstream 100055 4225173 ~ 4232690 (+)
XLOC_005735 dlk2 coding upstream 118836 4205724 ~ 4213909 (+)
XLOC_005734 NA coding upstream 140709 4181231 ~ 4192036 (+)
XLOC_005733 NA coding upstream 198632 4133743 ~ 4134113 (+)
XLOC_005732 NA coding upstream 347065 3979927 ~ 3985680 (+)
XLOC_005738 sft2d1 coding downstream 32602 4368504 ~ 4400816 (+)
XLOC_005739 NA coding downstream 62249 4398151 ~ 4408956 (+)
XLOC_005740 prr18 coding downstream 69380 4405282 ~ 4407074 (+)
XLOC_005741 si:ch211-130h14.4 coding downstream 73392 4409294 ~ 4439040 (+)
XLOC_005742 tbxtb coding downstream 103172 4439074 ~ 4453663 (+)
XLOC_005729 CU019624.1 non-coding upstream 424848 3895363 ~ 3907897 (+)
XLOC_005726 NA non-coding upstream 711917 3619266 ~ 3620828 (+)
XLOC_005744 NA non-coding downstream 217490 4553392 ~ 4553670 (+)
XLOC_005745 NA non-coding downstream 305403 4641305 ~ 4666921 (+)
XLOC_005747 NA non-coding downstream 375367 4711269 ~ 4721332 (+)
XLOC_005751 NA non-coding downstream 787528 5123430 ~ 5129369 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G369352 NA non-coding CI01000166 null 40701 ~ 41567 (-)