XLOC_005741 (si:ch211-130h14.4)


Basic Information

Item Value
gene id XLOC_005741
gene name si:ch211-130h14.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 4409294 ~ 4439040 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011367
CTACATCGAGATAGTAATTCAGAAAACTGCTAATTCTTCAGGTTTAGGAAGTTGCTTAGATTTTAACATCTAATATAAAGTAATCACAGTGTCGTGTGTAATTATAAACTGGTAGAAATGCGTTTACATGACTGATACTTGAAGAAGAATGTAttagttaataattaataatatcaaaCGCTTCAGAGAGCTGATTTCTCTCGCTAAACTGGCAAGTCTTTTTTAATTTCGGGCTTATCTTTATTATTTGTGCGATTTTAACGTTTAAGTATTTATATTTCGTGTATTTTAACTACAGAATAACTAATGCagAGTCCGCTGGTCTGATTTTGGCTATGAAAACTGAAAATATTTATCATGAAAGCTCTCTTCCACCTATTTTGGACTCTTACCAGTCAGCACTGTCTCCAGACAAGGCAGCCGGTTTATTTGAATATCAGAGGCAGAGGAGACGGCAAAGCTCCAGCAGAAGTGGGCCAGTCACCAAGACTTCTGCTAATGTTGTGGATGCTGATCCAGGACTTGAGAGAAAACGAAAAGCTCTTCTAGATCAGCGCCATCTAGAGACATACTACAAAATACACCACTTGAAGGACATGCTTGGATATCAATACGCTGCTTTACTGAAGGAAAAAGTTGAAAGACAAAGGCAAGAGATGAAGTCTCCTGTTCCAGATCATTCCAGACTTACAGAAGGACTTAAAAAGCAGAAGTCCGTCAGCCTTCATAAGCTTACCAGATCTTCCCCTATTCACGATGACACATACTTGAGGCGTCTACCTAAAACACAGCACTACCTGGTTCTGGAGCTGCAGAAACAGCTGGTCCGACTGGGCTATCTTCAGAGTCTCAGGGAGCAGGAGGTGTTTGGTGTTTGGGTAGAACAGCATAGAAACACACGTCAATTACAGAAGCAACTTAAGGCTGTAGCAGAACACAGCAGCCCAGATGTGACACTTGAGGACCTGCTCAAACTGAAGTCTGGATCTCTACCAAAACTCCAGATCAGATGTAATGACTCCACAGCACAACACAAACCTATGCCAGTATCACTAAAAGGGGGAAAAGGGGGTGGAGTGAACACTTTCCAGGGCAAACAGACCTCGGGACAAGACGAAATTGAGCTCATGTTTCCTGAGATCTTTACTCGGGAGCTCAAAGTTCCTGAATTTTCCGCTCTGCAGTCTACCTTTCTAGAAGAAGCCAACCCCATGATCCATCTAAAGATAGGCAATGAGCTACCAATCAAGTCAAAGACCATTGACGTTATGCAGAAAATAAGATTAATGCACAGCCTCTCACTCTCTTACATGGCTGACACCCAGAGAATTATGGCAAAAACTGGACTCGGCTCACATGTCACAGATGGATTCAGCATCAGAGAATTGATGGAGAATGAGTATTCTCACAAAGTCATAACCCAGAAATCCAGATGTCCTGCAAAGCCCATAGAAAGTGGAAATGCACATTTCACACCAAGTTTTCAGCCAGCAGAGAAAAGCGCCGAGGAATCACCATCTGCAGAACATTCTCCATCATCATATATAGACCCTACACTGCCACTCTGTTTAGCTGACATCTGTGCTGCTCATTCATTTGAGGCAGAAAAACGTGACAAGAAGATGTGGACAAATTATACGCAGAGCTCTACTGATGTTGATCTGTTATTTTAGAACAGCTCCAGGGTGCATGGTAAAAATACTAT
>TCONS_00011368
CTTGAGGCGTCTACCTAAAACACAGCACTACCTGGTTCTGGAGCTGCAGAAACAGCTGGTCCGACTGGGCTATCTTCAGAGTCTCAGGGAGCAGGAGGTGTTTGGTGTTTGGGTAGAACAGCATAGAAACACACGTCAATTACAGAAGCAACTTAAGGCTAACACAGCAGCCCAGATGTGACACTTGAGGACCTGCTCAAACTGAAGTCTGGATCTCTACCAAAACTCCAGATCAGATGTAATGACTCCACAGCACAACACAAACCTTTGGTCTTTTCACAGATGCCAGTATCACTAAAAGGGGGAAAAGGGGGTGGAGTGAACACTTTCCAGGGCAAACAGACCTCGGGACAAGACGAAATTGAGCTCATGTTTCCTGAGATCTTTACTCGGGAGCTCAAAGTTCCTGAATTTTCCGCTCTGCAGTCTACCTTTCTAGAAGAAGCCAACCCCATGATCCATCTAAAGATAGGCAATGAGCTACCAATCAAGTCAAAGACCATTGACGTTATGCAGAAAATAAGATTAATGCACAGCCTCTCACTCTCTTACATGGCTGACACCCAGAGAATTATGGCAAAAACTGGACTCGGCTCACATGTCACAGATGGATTCAGCATCAGAGAATTG
>TCONS_00013378
AACACAGCAGCCCAGATGTGACACTTGAGGACCTGCTCAAACTGAAGTCTGGATCTCTACCAAAACTCCAGATCAGATGTAATGACTCCACAGCACAACACAAACCTATGCCAGTATCACTAAAAGGGGGAAAAGGGGGTGGAGTGAACACTTTCCAGGGCAAACAGACCTCGGGACAAGACGAAATTGAGCTCATGTTTCC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081107-8 No description available

Ensembl:

ensembl_id ENSDARG00000094016

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011367 False 1705 mRNA 0.42 14 4409294 4439040
TCONS_00011368 False 630 mRNA 0.46 7 4422795 4437666
TCONS_00013378 True 202 lncRNA 0.48 2 4425021 4430704

Neighbor

gene id symbol gene type direction distance location
XLOC_005739 NA coding upstream 338 4398151 ~ 4408956 (+)
XLOC_005740 prr18 coding upstream 2220 4405282 ~ 4407074 (+)
XLOC_005738 sft2d1 coding upstream 8478 4368504 ~ 4400816 (+)
XLOC_005737 NA coding upstream 73392 4332745 ~ 4335902 (+)
XLOC_005736 mea1 coding upstream 176604 4225173 ~ 4232690 (+)
XLOC_005742 tbxtb coding downstream 34 4439074 ~ 4453663 (+)
XLOC_005743 pde10a coding downstream 66039 4505079 ~ 4620715 (+)
XLOC_005744 NA coding downstream 114352 4553392 ~ 4553670 (+)
XLOC_005745 NA coding downstream 202265 4641305 ~ 4666921 (+)
XLOC_005746 pla2g12b coding downstream 232658 4671698 ~ 4683595 (+)
XLOC_005734 NA non-coding upstream 217258 4181231 ~ 4192036 (+)
XLOC_005733 NA non-coding upstream 275181 4133743 ~ 4134113 (+)
XLOC_005732 NA non-coding upstream 423614 3979927 ~ 3985680 (+)
XLOC_005747 NA non-coding downstream 272229 4711269 ~ 4721332 (+)
XLOC_005751 NA non-coding downstream 684390 5123430 ~ 5129369 (+)
XLOC_005752 CR788226.1 non-coding downstream 958501 5397541 ~ 5401220 (+)

Expression


Co-expression Network