RNA id: TCONS_00011373


Basic Information

Item Value
RNA id TCONS_00011373
length 2280
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_005746
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 4671698 ~ 4683595 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGGCACTATCAACACTGTCTGTTTTTTTCTGCTGCTCACTCTTTTTCCTTCGAGCCCTTCAACTTCGTAGGTCTCCCTGGACTGTACTGTAATAGGACATCATGTTTCCTCGCGCACTACCCCTGCTCCTGCTGTGTATCTCTGCAGGCTTGGCTGCGACTCTTATCCAGGCTTCAGTAGATGCGGCCTCAGTAGATTCGCCTGCTGATGAAAGCCCAGATGTTAATCAGGAGAATCAGGCAGAGCATGTTTTAATGGCAGATGCCCCTGTTGAGGGAAAACCTGCACCGAGTGCCACAGAAGAATCTGAGGACGATGATGACTGGGGGTTCGGCTCTATCCGAGGAAGTTTACAGTCAGTCAATGGCTATTTTGACTCAATACTGGAGTTGATGGGAGGCCGTGATGGTGTATGTCAGTACCGCTGCAGATATGGTAAAGCTCCTCAGCCTCGTCCTGGCTATCAGATGTCAGAACCTGATGGTTGTAGCACGTCACTGCTTGGCTTCCAGTTTGATATGGGTGTCCCAGCCATGACCAAATGTTGCAACCAGTTAGATATTTGCTACGAAACCTGTGGATCCAACAAGTACCGCTGTGACACCAAATTCCGCTGGTGCCTCCACAGCATCTGCGGTGACCTGAAGAAGAGTCTGGGCCTTATGTCCAAAGTTGAAGCATGTGAGACCTTTGCAGACACCATGTACAACACTGTGTGGACTTTGGGCTGCAGACCCTTCATGAACGGCCAAAGGGCGTCCTGCTATTGCGAAGGAGAAGAGAAGGATGAGCTCTGAAGACCAacaaaatcacaaaacacaccACCTTCAGCACATATAAACACTTCATAGCTTTAAACTATACCACACAAGGCACGAGTCACATTCAAACAAGTCACATTTCACTACAAACATTGAGTAGAAACTATTGATCGACATTAATTTGAAGTGAAATGTGACCTTCACACGTTGTGGAGATTCATCCACTAACCCTTGAACTGGTGCTATTGGATTTTGTCAGACAAGAAAAAGTTTATATGGTATATGGGTGTCGTTATCGcatatgtattgtgtgtgtgtgtgtgattgtgtatagGTTTCGCAcacagaaatctgatatatggcaatatatgcaaatttcATATATAACATACAAGTTTATATTTGAATTTCACATATAGAAAAATcaatggttcattccactgtgtcagcctctaaaataaagactaagctgaagggaaatgacTGAATATAGAAAAATAGATATCCGTTTATGTGTATATTTTAAGTTTCAACCATTTTAATTACAGATGTGTactatgcatatgtgtgtgtgtcatatatgAACACAAAATGATTGCTAATATATTTGAACCTATACGGTATGTACATGTTTGTAATTATAATGGTTGACAAACTATATatgtaaacagccatttttgCTACATACACTTGTATGTCATAtaattaatttgcatatatttccatatgTCGGATTTCTATATGGGTTGTTATATGGGAAGACAACATTTAACTTCTTATGACCATAGATGAAGCCATTAAGACGTAGAGAATTCACACAAGTATTGGTACCGaactaatatttaatatattaaggaaCTTTTGTTTGGTGATGATCTATATATCATGgtaatatttatgtaatattacTGCATTACTATTATTTTCTTCAAATGTAACTAAATGTAGAATCAGTGCTCAGCAAAAACACGCAGGAATGTTTTTCATTGTGAGTAAAGACTGAACGAAAAAGACTCGGCTGTAACATCCCTTTATTTCGCCCAGTAAAACTCTGCTAATCATATATGCAAATGAGCCatttaagcttttttatttattctgtgcTTCCATGCTTGTTAATTGTACACATTACAGTACTACAAATTAATGCAGACAAAAATGCATCTTTCTTTTCGGTTCAGGTAAGGATTATATAACAGAATAGGATTAGAAGCAGTGGAGATGAGATAGGCTTCAGCAGAGCCTCCTCTTATCAATTCATGTATGATTATTactgactacactgtaaaaatatccataaattagtgGTTTTTCGTATTTtgcgattcatgtttttatttatgcttttgagttgcattatgggatgtatgggatctttcttccaacaacgtTTAGCCTTGAAAAGTTTggtaaaagtgacttttataaacattaataatagtttaaagtgctatattgtctgggttggtgttgtatattacgctacatacaccttgtaataaactgccagcacattt

Function

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0070328 triglyceride homeostasis biological_process
GO:0050482 arachidonic acid secretion biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2771 Predicted to enable calcium ion binding activity and phospholipase A2 activity. Predicted to be involved in cholesterol homeostasis and triglyceride homeostasis. Predicted to act upstream of or within arachidonic acid secretion; lipid catabolic process; and phospholipid metabolic process. Predicted to be located in extracellular region. Is expressed in caudal fin skeleton and yolk syncytial layer. Orthologous to human PLA2G12B (phospholipase A2 group XIIB).

Ensembl:

ensembl_id ENSDART00000164617

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013547 lncRNA upstream 4777 4641305 ~ 4666921 (+) False XLOC_005745
TCONS_00013380 lncRNA upstream 4777 4664858 ~ 4666921 (+) True XLOC_005745
TCONS_00013379 lncRNA upstream 118028 4553392 ~ 4553670 (+) True XLOC_005744
TCONS_00013378 lncRNA upstream 240994 4425021 ~ 4430704 (+) True XLOC_005741
TCONS_00013377 lncRNA upstream 262742 4398151 ~ 4408956 (+) True XLOC_005739
TCONS_00013548 lncRNA downstream 27674 4711269 ~ 4721332 (+) True XLOC_005747
TCONS_00013549 lncRNA downstream 439835 5123430 ~ 5129369 (+) True XLOC_005751
TCONS_00011385 lncRNA downstream 713946 5397541 ~ 5401220 (+) False XLOC_005752
TCONS_00013550 lncRNA downstream 716239 5399834 ~ 5401220 (+) True XLOC_005752
TCONS_00013551 lncRNA downstream 722555 5406150 ~ 5411457 (+) True XLOC_005753
TCONS_00011372 mRNA upstream 50983 4505232 ~ 4620715 (+) True XLOC_005743
TCONS_00011371 mRNA upstream 56482 4505079 ~ 4615216 (+) False XLOC_005743
TCONS_00011370 mRNA upstream 218035 4440869 ~ 4453663 (+) True XLOC_005742
TCONS_00011369 mRNA upstream 218182 4439074 ~ 4453516 (+) False XLOC_005742
TCONS_00011367 mRNA upstream 232658 4409294 ~ 4439040 (+) False XLOC_005741
TCONS_00011376 mRNA downstream 188291 4871886 ~ 4969687 (+) False XLOC_005748
TCONS_00011377 mRNA downstream 199782 4883377 ~ 4968574 (+) False XLOC_005748
TCONS_00011378 mRNA downstream 199903 4883498 ~ 4968584 (+) False XLOC_005748
TCONS_00011379 mRNA downstream 204756 4888351 ~ 4951795 (+) True XLOC_005748
TCONS_00011380 mRNA downstream 311838 4995433 ~ 5000739 (+) True XLOC_005749
TCONS_00011360 other upstream 705443 3962767 ~ 3966255 (+) True XLOC_005731
TCONS_00011338 other upstream 1838491 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011320 other upstream 2285165 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011310 other upstream 2906076 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011289 other upstream 3822272 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011389 other downstream 1302181 5985776 ~ 6001981 (+) True XLOC_005757
TCONS_00011399 other downstream 1730689 6414284 ~ 6414400 (+) True XLOC_005764
TCONS_00011412 other downstream 2697923 7381518 ~ 7381633 (+) True XLOC_005774
TCONS_00011427 other downstream 3623072 8306667 ~ 8317874 (+) True XLOC_005783
TCONS_00011428 other downstream 3855672 8539267 ~ 8539381 (+) True XLOC_005784

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000005_01641148_01646936.mRNA True 1134 mRNA 0.44 4 CI01000005 1641148 ~ 1647378 (+)