Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00011370 |
| length | 1583 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 8 |
| gene id | XLOC_005742 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 4439074 ~ 4453663 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001707 | mesoderm formation | biological_process |
| GO:0001708 | cell fate specification | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0003007 | heart morphogenesis | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-081028-48 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including mesoderm formation; regulation of transcription by RNA polymerase II; and somitogenesis. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in margin; mesoderm; notochord; tail bud; and ventral mesoderm. Human ortholog(s) of this gene implicated in neural tube defect. Orthologous to human TBXT (T-box transcription factor T). |
| ensembl_id | ENSDART00000156323 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013378 | lncRNA | upstream | 10165 | 4425021 ~ 4430704 (+) | True | XLOC_005741 |
| TCONS_00013377 | lncRNA | upstream | 31913 | 4398151 ~ 4408956 (+) | True | XLOC_005739 |
| TCONS_00011364 | lncRNA | upstream | 104967 | 4332745 ~ 4335902 (+) | True | XLOC_005737 |
| TCONS_00013546 | lncRNA | upstream | 248833 | 4181231 ~ 4192036 (+) | True | XLOC_005734 |
| TCONS_00013545 | lncRNA | upstream | 306756 | 4133743 ~ 4134113 (+) | True | XLOC_005733 |
| TCONS_00013379 | lncRNA | downstream | 99729 | 4553392 ~ 4553670 (+) | True | XLOC_005744 |
| TCONS_00013547 | lncRNA | downstream | 187642 | 4641305 ~ 4666921 (+) | False | XLOC_005745 |
| TCONS_00013380 | lncRNA | downstream | 211195 | 4664858 ~ 4666921 (+) | True | XLOC_005745 |
| TCONS_00013548 | lncRNA | downstream | 257606 | 4711269 ~ 4721332 (+) | True | XLOC_005747 |
| TCONS_00013549 | lncRNA | downstream | 669767 | 5123430 ~ 5129369 (+) | True | XLOC_005751 |
| TCONS_00011367 | mRNA | upstream | 1829 | 4409294 ~ 4439040 (+) | False | XLOC_005741 |
| TCONS_00011368 | mRNA | upstream | 3203 | 4422795 ~ 4437666 (+) | False | XLOC_005741 |
| TCONS_00011366 | mRNA | upstream | 33795 | 4405282 ~ 4407074 (+) | True | XLOC_005740 |
| TCONS_00011365 | mRNA | upstream | 40053 | 4368504 ~ 4400816 (+) | True | XLOC_005738 |
| TCONS_00011363 | mRNA | upstream | 208179 | 4225173 ~ 4232690 (+) | True | XLOC_005736 |
| TCONS_00011371 | mRNA | downstream | 51416 | 4505079 ~ 4615216 (+) | False | XLOC_005743 |
| TCONS_00011372 | mRNA | downstream | 51569 | 4505232 ~ 4620715 (+) | True | XLOC_005743 |
| TCONS_00011373 | mRNA | downstream | 218035 | 4671698 ~ 4683595 (+) | False | XLOC_005746 |
| TCONS_00011374 | mRNA | downstream | 218074 | 4671737 ~ 4683149 (+) | False | XLOC_005746 |
| TCONS_00011375 | mRNA | downstream | 218079 | 4671742 ~ 4682358 (+) | True | XLOC_005746 |
| TCONS_00011360 | other | upstream | 474614 | 3962767 ~ 3966255 (+) | True | XLOC_005731 |
| TCONS_00011338 | other | upstream | 1607662 | 2833092 ~ 2833207 (+) | True | XLOC_005718 |
| TCONS_00011320 | other | upstream | 2054336 | 2386413 ~ 2386533 (+) | True | XLOC_005710 |
| TCONS_00011310 | other | upstream | 2675247 | 1765507 ~ 1765622 (+) | True | XLOC_005701 |
| TCONS_00011289 | other | upstream | 3591443 | 844143 ~ 849426 (+) | False | XLOC_005684 |
| TCONS_00011389 | other | downstream | 1532113 | 5985776 ~ 6001981 (+) | True | XLOC_005757 |
| TCONS_00011399 | other | downstream | 1960621 | 6414284 ~ 6414400 (+) | True | XLOC_005764 |
| TCONS_00011412 | other | downstream | 2927855 | 7381518 ~ 7381633 (+) | True | XLOC_005774 |
| TCONS_00011427 | other | downstream | 3853004 | 8306667 ~ 8317874 (+) | True | XLOC_005783 |
| TCONS_00011428 | other | downstream | 4085604 | 8539267 ~ 8539381 (+) | True | XLOC_005784 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000005_01460222_01467970.mRNA | True | 1225 | mRNA | 0.51 | 8 | CI01000005 | 1460222 ~ 1467992 (+) |
| bowfin (Amia calva) | AMCG00001839 | True | 1944 | mRNA | 0.56 | 8 | CM030143.1 | 17094564 ~ 17098333 (+) |
