RNA id: TCONS_00013547


Basic Information

Item Value
RNA id TCONS_00013547
length 547
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id XLOC_005745
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 4641305 ~ 4666921 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtaacagtggaaaagccatctATATGAAGTGCTGTGAGTCCACAGTGTTTACGTCTTATTTCATTGGGATCTGAGCCGACAGCATCTCCATAATGTCAGACTGACTTCATGAGGAGACGGATGCTTTTCTCACAGCAGCAGAGGAGCTAATGGTCCAGTAAGTTTTAtagtgttttctttgtttttcttaGGTTCTGTCTTCttattaggactgcacaatatatacagttgaagtaaaaatgattagccctcgtGTGAGTTTTCttctaatatttcctaaattatgtttaacagagcaattaatttttcacatatatttttttattattatttggtttatttcggctagaataaaagcagtttttaataaaataaaaaaaacattttaagatttgTTAAAATTGAAGATCATACCCACATTTTTTGGGACTGTCCTAAGATTGAAGAaatttggaaaaatgttaaaaaaaaagaaatagataaTATATTAGATATAGAAATACCCCTCGATCCAGTTATGTGCTTACTGTGAGCACTGTCCAAAGAA

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0090287 regulation of cellular response to growth factor stimulus biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013379 lncRNA upstream 87635 4553392 ~ 4553670 (+) True XLOC_005744
TCONS_00013378 lncRNA upstream 210601 4425021 ~ 4430704 (+) True XLOC_005741
TCONS_00013377 lncRNA upstream 232349 4398151 ~ 4408956 (+) True XLOC_005739
TCONS_00011364 lncRNA upstream 305403 4332745 ~ 4335902 (+) True XLOC_005737
TCONS_00013546 lncRNA upstream 449269 4181231 ~ 4192036 (+) True XLOC_005734
TCONS_00013548 lncRNA downstream 44348 4711269 ~ 4721332 (+) True XLOC_005747
TCONS_00013549 lncRNA downstream 456509 5123430 ~ 5129369 (+) True XLOC_005751
TCONS_00011385 lncRNA downstream 730620 5397541 ~ 5401220 (+) False XLOC_005752
TCONS_00013550 lncRNA downstream 732913 5399834 ~ 5401220 (+) True XLOC_005752
TCONS_00013551 lncRNA downstream 739229 5406150 ~ 5411457 (+) True XLOC_005753
TCONS_00011372 mRNA upstream 20590 4505232 ~ 4620715 (+) True XLOC_005743
TCONS_00011371 mRNA upstream 26089 4505079 ~ 4615216 (+) False XLOC_005743
TCONS_00011370 mRNA upstream 187642 4440869 ~ 4453663 (+) True XLOC_005742
TCONS_00011369 mRNA upstream 187789 4439074 ~ 4453516 (+) False XLOC_005742
TCONS_00011367 mRNA upstream 202265 4409294 ~ 4439040 (+) False XLOC_005741
TCONS_00011373 mRNA downstream 4777 4671698 ~ 4683595 (+) False XLOC_005746
TCONS_00011374 mRNA downstream 4816 4671737 ~ 4683149 (+) False XLOC_005746
TCONS_00011375 mRNA downstream 4821 4671742 ~ 4682358 (+) True XLOC_005746
TCONS_00011376 mRNA downstream 204965 4871886 ~ 4969687 (+) False XLOC_005748
TCONS_00011377 mRNA downstream 216456 4883377 ~ 4968574 (+) False XLOC_005748
TCONS_00011360 other upstream 675050 3962767 ~ 3966255 (+) True XLOC_005731
TCONS_00011338 other upstream 1808098 2833092 ~ 2833207 (+) True XLOC_005718
TCONS_00011320 other upstream 2254772 2386413 ~ 2386533 (+) True XLOC_005710
TCONS_00011310 other upstream 2875683 1765507 ~ 1765622 (+) True XLOC_005701
TCONS_00011289 other upstream 3791879 844143 ~ 849426 (+) False XLOC_005684
TCONS_00011389 other downstream 1318855 5985776 ~ 6001981 (+) True XLOC_005757
TCONS_00011399 other downstream 1747363 6414284 ~ 6414400 (+) True XLOC_005764
TCONS_00011412 other downstream 2714597 7381518 ~ 7381633 (+) True XLOC_005774
TCONS_00011427 other downstream 3639746 8306667 ~ 8317874 (+) True XLOC_005783
TCONS_00011428 other downstream 3872346 8539267 ~ 8539381 (+) True XLOC_005784

Expression Profile

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