Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00011377 |
| length | 1592 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 12 |
| gene id | XLOC_005748 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 4871886 ~ 4969687 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0070509 | calcium ion import | biological_process |
| GO:0051560 | mitochondrial calcium ion homeostasis | biological_process |
| GO:0051561 | positive regulation of mitochondrial calcium ion concentration | biological_process |
| GO:0036444 | calcium import into the mitochondrion | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0006851 | mitochondrial calcium ion transmembrane transport | biological_process |
| GO:0005743 | mitochondrial inner membrane | cellular_component |
| GO:0005758 | mitochondrial intermembrane space | cellular_component |
| GO:0032592 | integral component of mitochondrial membrane | cellular_component |
| GO:1990246 | uniplex complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| id | description |
|---|---|
| ko03029 | Mitochondrial biogenesis |
| ko04990 | Domain-containing proteins not elsewhere classified |
| id | description |
|---|---|
| ZDB-GENE-070410-22 | Predicted to enable calcium ion binding activity. Predicted to be involved in calcium import into the mitochondrion and positive regulation of mitochondrial calcium ion concentration. Predicted to act upstream of or within calcium ion transport. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Predicted to be integral component of mitochondrial membrane. Predicted to be part of uniplex complex. Is expressed in female organism; heart; and heart tube. Human ortholog(s) of this gene implicated in myopathy with extrapyramidal signs. Orthologous to human MICU1 (mitochondrial calcium uptake 1). |
| ensembl_id | ENSDART00000181530 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013548 | lncRNA | upstream | 162045 | 4711269 ~ 4721332 (+) | True | XLOC_005747 |
| TCONS_00013547 | lncRNA | upstream | 216456 | 4641305 ~ 4666921 (+) | False | XLOC_005745 |
| TCONS_00013380 | lncRNA | upstream | 216456 | 4664858 ~ 4666921 (+) | True | XLOC_005745 |
| TCONS_00013379 | lncRNA | upstream | 329707 | 4553392 ~ 4553670 (+) | True | XLOC_005744 |
| TCONS_00013378 | lncRNA | upstream | 452673 | 4425021 ~ 4430704 (+) | True | XLOC_005741 |
| TCONS_00013549 | lncRNA | downstream | 154856 | 5123430 ~ 5129369 (+) | True | XLOC_005751 |
| TCONS_00011385 | lncRNA | downstream | 428967 | 5397541 ~ 5401220 (+) | False | XLOC_005752 |
| TCONS_00013550 | lncRNA | downstream | 431260 | 5399834 ~ 5401220 (+) | True | XLOC_005752 |
| TCONS_00013551 | lncRNA | downstream | 437576 | 5406150 ~ 5411457 (+) | True | XLOC_005753 |
| TCONS_00013552 | lncRNA | downstream | 484538 | 5453112 ~ 5463250 (+) | False | XLOC_005754 |
| TCONS_00011373 | mRNA | upstream | 199782 | 4671698 ~ 4683595 (+) | False | XLOC_005746 |
| TCONS_00011374 | mRNA | upstream | 200228 | 4671737 ~ 4683149 (+) | False | XLOC_005746 |
| TCONS_00011375 | mRNA | upstream | 201019 | 4671742 ~ 4682358 (+) | True | XLOC_005746 |
| TCONS_00011372 | mRNA | upstream | 262662 | 4505232 ~ 4620715 (+) | True | XLOC_005743 |
| TCONS_00011371 | mRNA | upstream | 268161 | 4505079 ~ 4615216 (+) | False | XLOC_005743 |
| TCONS_00011380 | mRNA | downstream | 26859 | 4995433 ~ 5000739 (+) | True | XLOC_005749 |
| TCONS_00011381 | mRNA | downstream | 36350 | 5004924 ~ 5028964 (+) | False | XLOC_005750 |
| TCONS_00011382 | mRNA | downstream | 36465 | 5005039 ~ 5028233 (+) | False | XLOC_005750 |
| TCONS_00011383 | mRNA | downstream | 44998 | 5013572 ~ 5017722 (+) | False | XLOC_005750 |
| TCONS_00011384 | mRNA | downstream | 49290 | 5017864 ~ 5026221 (+) | True | XLOC_005750 |
| TCONS_00011360 | other | upstream | 917122 | 3962767 ~ 3966255 (+) | True | XLOC_005731 |
| TCONS_00011338 | other | upstream | 2050170 | 2833092 ~ 2833207 (+) | True | XLOC_005718 |
| TCONS_00011320 | other | upstream | 2496844 | 2386413 ~ 2386533 (+) | True | XLOC_005710 |
| TCONS_00011310 | other | upstream | 3117755 | 1765507 ~ 1765622 (+) | True | XLOC_005701 |
| TCONS_00011289 | other | upstream | 4033951 | 844143 ~ 849426 (+) | False | XLOC_005684 |
| TCONS_00011389 | other | downstream | 1017202 | 5985776 ~ 6001981 (+) | True | XLOC_005757 |
| TCONS_00011399 | other | downstream | 1445710 | 6414284 ~ 6414400 (+) | True | XLOC_005764 |
| TCONS_00011412 | other | downstream | 2412944 | 7381518 ~ 7381633 (+) | True | XLOC_005774 |
| TCONS_00011427 | other | downstream | 3338093 | 8306667 ~ 8317874 (+) | True | XLOC_005783 |
| TCONS_00011428 | other | downstream | 3570693 | 8539267 ~ 8539381 (+) | True | XLOC_005784 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000005_01795371_01878902.mRNA | True | 1648 | mRNA | 0.50 | 12 | CI01000005 | 1795371 ~ 1878956 (+) |
