RNA id: AMCG00001839


Basic Information

Item Value
RNA id AMCG00001839
length 1944
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00001839
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17094564 ~ 17098333 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGACTGATATGGCCGATTCCAGCCAATAGCAGGGGGGGATTGCACATCAAAGCCAGGCCCGACCAACCAGCCCCCTCCCCAAATCTGGCTGGTGTCATGAGGGAAGTTTGGGACTATTTATTGGGAACCAATCTAGGTAATGACTCCGTTGCCTTTTGTGTATCATGCGATTATATTGAAAGCACCGAGACAAGCAATTGGAGGATACCACCAGGAACAAAACCTTTATTCCCGGGACACCTGGagagtttgcattttattttattcattttattatttctgcacGATGACCTCCAGCACCACAGACCCCTCCGGGAAGAGCGTCCAGTATCGGGTGGACCATCTGCTCAGCGCCGTGGAGAGCGAGCTGCAGGCGGGCAGTGAGAAGGGAGACCCCACGGAGAGGGAGCTGAGGGTCAGCCTGGACGAGAACGAGCTGTGGCTCAAGTTCAAAGAGCTCACCAACGAGATGATCGTGACCAAGAACGGCAGGCGGATGTTCCCGGTGCTGAAGGTGAATGTGTCCGGCCTGGACCCCAACGCCATGTACTCCTTCCTGCTGGATTTCGTGGCTGCCGACAATCACCGGTGGAAGTATGTGAACGGAGAGTGGGTCCCCggggggaagccggagccgcaGGCGCCCAGCTGCGTGTACATCCACCCTGACTCGCCCAACTTCGGGGCGCACTGGATGAAGGCACCGGTCTCCTTCAGCAAGGTCAAACTCACCAACAAACTCAATGGGGGCGGACAGATAATGCTGAACTCTCTGCACAAATACGAGCCCAGGATCCACATCGTGAGGGTTGGAGGCCCTCAGCGGATGATTACCAGTCACTCGTTCCCAGAAACCCAGTTCATTGCCGTCACAGCGTACCAGAACGAAGAGATCACAGCactcaaaattaaatacaacccGTTTGCAAAGGCTTTTCTGGATGCTAAAGAACGGAGTGACCACAAGGACATCATGGACGAGGTGGGGGACAGCCAGCAGTCGGGGTATTCCCAGTtAGGTGGCTGGTTCATTCCAGGCACGGGCTCTTTATGCCCCCCGTCGAACCCTCACCCCCAGTTCGGGAGCCCCCtcaccctctcctctcctcacgGCTGTGATCGCTACTCCACCCTGAGGAACCACCGCTCGGCGCCCTACCACAGCCCCTACTCCCACCGCAACCACTCCCCCACCGGCTACACAGATAACTCCGCCTGCCTCTCCGTGCTGCCCACCCATGACAACTGGTCCAGTCTGCAGATGCCCAGTCACTCCAGCATGCTGCCCGGGTCCCACAGCTCCAGCCCGGCCACCAGCTCCAGCCAGTACCCCAACCTGTGGTCGGTCAGCAACAGCTCCGTCAACCCGGTGTCCCAGTCGGGCAACATGTCCAACGGGCTGGGCTCCCAGTTCCTGCGCGGCTCCCCGGCTCACTACCCCGGCCTGTCCCACCCCGTGGCGGCGCCCTCCTCCGTCTCCCCGCTGTACGACGGCTCGGCCCTGGGGGAGGTGCACGACACGCAGTACGACGCCTCACCCCACGCCCGGCTGGCGGCCGCCTGGACCCCCGTCGCCCCATCCTCCCTGTAGGAGAGGCTGAACTGACTCTCTCGCCCTCCAAGGACAGGCAGACGTCTACACTGTGTCCTCTTActgtaacaaaaacaagcaaattgGTAATTAAGAAGAGACCAAAGAGATTCACAAATCATTGAATCTGTTCTACTTCTCAAGGCCAGCGTGTCAACCTGTACAGATCTTTCTTGTCAATATTGTAAATACTACTATaatcctgtttattttattattgcctCAGACGTGGGGTTTACCGTGTACATGTGTTGTGTTATTCGTGTCTTTATTGTCATGTGGAAAATGAAACTTTAATGTATTTGAGTAttgatgtgaaaaacaaacattaaaatgtgttgcgCACCGTGa

Function

GO: NA

KEGG:

id description
K10172 BRA, T; brachyury protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202248 lncRNA upstream 184531 16905249 ~ 16910033 (+) True G160649
TU202247 lncRNA upstream 192124 16899895 ~ 16902440 (+) True G160648
TU202122 lncRNA upstream 816510 16276806 ~ 16278054 (+) True G160542
TU202022 lncRNA upstream 975298 16117205 ~ 16119266 (+) True G160464
TU202021 lncRNA upstream 979865 16114344 ~ 16114699 (+) True G160463
TU202349 lncRNA downstream 81384 17179717 ~ 17182601 (+) False AMCG00001841
TU202403 lncRNA downstream 309924 17408257 ~ 17408616 (+) True G160782
TU202511 lncRNA downstream 699866 17798199 ~ 17804178 (+) True G160869
TU202542 lncRNA downstream 761829 17860162 ~ 17861427 (+) True G160895
TU202559 lncRNA downstream 818462 17916795 ~ 17917054 (+) True G160910
AMCG00001837 mRNA upstream 1966 17074216 ~ 17092598 (+) True AMCG00001837
AMCG00001836 mRNA upstream 23906 17069882 ~ 17070658 (+) True AMCG00001836
AMCG00001831 mRNA upstream 28063 17055481 ~ 17066501 (+) True AMCG00001831
AMCG00001830 mRNA upstream 86095 16995655 ~ 17008469 (+) True AMCG00001830
AMCG00001819 mRNA upstream 117604 16969820 ~ 16976960 (+) True AMCG00001819
AMCG00001838 mRNA downstream 45908 17144241 ~ 17160791 (+) True AMCG00001838
AMCG00001840 mRNA downstream 78882 17177215 ~ 17179413 (+) True AMCG00001840
AMCG00001841 mRNA downstream 81261 17179594 ~ 17181775 (+) True AMCG00001841
AMCG00001846 mRNA downstream 347599 17445932 ~ 17446842 (+) False AMCG00001846
AMCG00001856 mRNA downstream 420371 17518704 ~ 17520528 (+) True AMCG00001856
TU202141 other upstream 722260 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 799058 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 1655533 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 1759997 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 2824374 14269615 ~ 14270190 (+) True G160026
TU202413 other downstream 319018 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 1089569 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 1118242 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 1571949 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 1801004 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011370 True 1583 mRNA 0.49 8 NC_007124.7 4440869 ~ 4453663 (+)