G160782


Basic Information

Item Value
gene id G160782
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17408257 ~ 17408616 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU202403
ACAATACGATACACCATTCATGTAGCATGTATGGTGATACGTTTAAAATCCATAATTAAAACTGCCAATCATGagaaatatttttagttttatgtattttgaaaaatggaAACATGACTCAATTAACtcttatgtatttgtgaatattCAAATGGTTATCATTTCAGGGGGGCATAACTGCACATAACAGGACatggagagaggggaagaaaaaacaaacaacaacaaatgatcACAAGTAAAAAAGCTACAAATCTCTACAATGTTTCATGAGCAAACCAGTTCTGCAAAGTCAGAGAAAGTGTGCACAAAAGCGTTCGCACTGTTATCTTGTGGACAGAACCACACAACGGTCTATCN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202403 True 360 lncRNA 0.35 1 17408257 17408616

Neighbor

gene id symbol gene type direction distance location
AMCG00001840 NA coding upstream 228844 17177215 ~ 17179413 (+)
AMCG00001838 pde10a coding upstream 247466 17144241 ~ 17160791 (+)
AMCG00001839 t,LOC102777203 coding upstream 309924 17094564 ~ 17098333 (+)
AMCG00001837 NA coding upstream 315659 17074216 ~ 17092598 (+)
AMCG00001836 NA coding upstream 337599 17069882 ~ 17070658 (+)
AMCG00001856 park2 coding downstream 110088 17518704 ~ 17520528 (+)
AMCG00001853 NA coding downstream 119125 17527741 ~ 17531215 (+)
AMCG00001854 NA coding downstream 123835 17532451 ~ 17543361 (+)
AMCG00001852 ubr2 coding downstream 135136 17543752 ~ 17568195 (+)
AMCG00001847 NA coding downstream 186717 17595333 ~ 17601349 (+)
G160649 NA non-coding upstream 498224 16905249 ~ 16910033 (+)
G160648 NA non-coding upstream 505817 16899895 ~ 16902440 (+)
G160542 tubb4b,LOC106575097,LOC105893757 non-coding upstream 1130203 16276806 ~ 16278054 (+)
G160464 NA non-coding upstream 1288991 16117205 ~ 16119266 (+)
G160463 NA non-coding upstream 1293558 16114344 ~ 16114699 (+)
G160869 NA non-coding downstream 389583 17798199 ~ 17804178 (+)
G160895 NA non-coding downstream 451546 17860162 ~ 17861427 (+)
G160910 NA non-coding downstream 508179 17916795 ~ 17917054 (+)
G160939 NA non-coding downstream 615580 18024196 ~ 18029816 (+)
G160943 NA non-coding downstream 630088 18038704 ~ 18039374 (+)
AMCG00001841 NA other upstream 225656 17179594 ~ 17182601 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other upstream 1030397 16237262 ~ 16377860 (+)
AMCG00001762 NA other upstream 1969226 15432337 ~ 15439031 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other upstream 2073677 15331620 ~ 15334580 (+)
G160026 NA other upstream 3138067 14269615 ~ 14270190 (+)
AMCG00001846 NA other downstream 8735 17417351 ~ 17462934 (+)
AMCG00001881 NA other downstream 779286 18187902 ~ 18209391 (+)
AMCG00001883 NA other downstream 801393 18210009 ~ 18217138 (+)
AMCG00001880 NA other downstream 1255379 18663995 ~ 18673815 (+)
AMCG00001889 cript,LOC107582781,LOC107728714 other downstream 1490721 18899337 ~ 18901718 (+)

Expression


Co-expression Network